GGGenome | Results

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2025-04-09 01:54:54, GGGenome : Stickleback genome, Broad/gasAcu1 (Feb, 2006)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

chrII:7454212-7454226

AGGAGAAACCTTTGTGTGTCAACTGTTTGA7454212TTCATTGACAACATTTGGAGTTCATTAAAATCAGCATAGCAACAT

chrUn:5453975-5453989

CATACAAGTTAATTGTTTGCTGTTGTGGTT5453975TTCATTGACAACATTGATTGAATTGTGGTTTTCATTGACAACATT

chrUn:5454005-5454019

TTCATTGACAACATTGATTGAATTGTGGTT5454005TTCATTGACAACATTGATTGAATCTCCTCCGCCTTAAGGTAGCAA

chrXIX:2136493-2136507

AATATATTTTGTGCGAGAAAACGTTTTTTC2136493TTCATTGACAACATTACTCTCCCTGTCATGAACAATACACCTTTT

chrUn:61583944-61583958

CCCATTTCTGTCACTCAGCAAAAGTGTGAC61583944AATGTTGTCAATGAATTGCTGAATCAAACAAATGCATGCTGAAGG

chrVII:16960693-16960707

TATTTCTGAGAAGCGCATGGGCCAAATCCT16960693AATGTTGTCAATGAAAATAGAGCAATGATTTGGCAGAGATGTACT

chrXII:16925615-16925629

AAATAAGGCAATTCTTGGTAGCCTCTCATC16925615AATGTTGTCAATGAACACATTAAATACCTGCAGGTTGGGGTTACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.084 | 0.075 | search_plus_done; http://172.18.8.76:28082/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.089 | 0.005 | search_minus_done; http://172.18.8.76:28082/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.089 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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