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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-11-24 16:14:22, GGGenome : Naked mole-rat genome, Broad HetGla_female_1.0/hetGla2 (Jan, 2012)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

JH602045:7548924-7548938
TGATCAGTTCAACTGACAAGCTCTAAAATC7548924TTCATTGACAACATTTCCCAGCTTGTACAAAATGACACCTGGTTT
JH602065:12958787-12958801
TAACTGTCATTACTCCACATTCAGGCAATT12958787TTCATTGACAACATTAATTTGTATATTAGCTGACAGCCTCCCAAC
JH602125:6333340-6333354
GGGTGACTAAGAAAACAAGAGATCACACAC6333340TTCATTGACAACATTGCATTATATTCTCCACCAGGAGACAATGTA
JH602190:1481603-1481617
ATGTCTATTTTAAAACAATTTTAGTTTCTT1481603TTCATTGACAACATTGCAGAAAAAACAGAATATTACTTTAGTATA
JH602046:24397826-24397840
ACATTCTCATTTATATGATGTCAGTTTTTA24397826AATGTTGTCAATGAATACATTTTTAAAGTGTGCATGAACTAAAGC
JH602062:23068220-23068234
ACTGTTAAATGTTTTTTGTTATAGAAAAAT23068220AATGTTGTCAATGAAAAAATCAGTCATCAAGTTAACTCTAATGCT
JH602064:10949398-10949412
GTATAGTGTGAAAAACTTCCTGGCCAGAAC10949398AATGTTGTCAATGAAGCCACAACTGGCTAGCTTCACCCTTATGAT
JH602068:5274903-5274917
TCAACCTGTTAGTCTGAGGAAAACAGAAGC5274903AATGTTGTCAATGAAAAGTGGATATACCCAGATAACTAAATAATA
JH602075:23249414-23249428
AATGCAGTCCTCAATTTTTTAAACTATAAA23249414AATGTTGTCAATGAAATCCTTGAGGACAGCAACTATCATTGAAAG
JH602085:4797715-4797729
AAAAGCTGAACTAGTTCAATTTGGGTAATG4797715AATGTTGTCAATGAACAATACCTTAAAGTCCAGTCTCCTTATCTT
JH602108:7902763-7902777
AATACTTCATTATTTTAAGTAGGATTATTA7902763AATGTTGTCAATGAAATAAAATGTCTTCTAAAATATAGCCAGAGT
JH602111:10424870-10424884
AGAGGCATCAGGAAGCAAACAATAATATAA10424870AATGTTGTCAATGAATACACAGAGTGAGAGGTATATAGTCTCATA
JH602139:7258508-7258522
TTTCACTAACACACAGACACACTTGTTAAA7258508AATGTTGTCAATGAAAGTGCATAAAGGGATCTTCTTAAGCCAAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/hetGla2/TTCATTGACAACATT
lang : ja | db : hetGla2 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.081 | 0.072 | search_plus_done; http://172.18.8.77:28046/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.005 | search_minus_done; http://172.18.8.77:28046/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.088 | 0.002 | cgi_end;

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