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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-05-16 08:36:48, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

chr1:76855-76868
AATACAAAATAATTGATGCACTCAAGTCTA76855TTCATTGA-AGCATTGTTTTTCATAGTAAACGGAAAGTAGGCCGG
chr1:619400-619413
ATATGCTGAAGAGATATCTCCAGGCTCATG619400TTCATTG-CAGCATTATTCACAATACCCAAATATGAAATCAACAC
chr1:620618-620632
ATACTAGAATTTTAAAAGCAAATGTCTTTA620618TTCACTGACAACATAATCATCTATAAAGAAAATCCTACATAACCT
chr1:1403532-1403547
GAGGCTCCGCCTTGGGCTTTCTATTAGAAA1403532GTCATTGAGCAACATTGGTGCTGAGGACGCAGGCAGGGCTGTGGGC
chr1:1717934-1717948
AGAAAATTAAAAACCAGGGACTGAATTTAC1717934ATCATTGACAACATCAGAGAGGCTGCCCTAGACTCTCTGGTTTTG
chr1:1738970-1738982
AAAGAACAAACCACTTTTAGACATTCCAAA1738970TTCA-TGA-AACATTTCTCACCCAAAATACCCCATGAAATTTCCC
chr1:1789796-1789809
AAAAGTCCGTTTTTAACTATTTTATTTTTT1789796TTCAATGACAA-ATTCCACTTGTACCATAGAAGCCATATTCTGCA
chr1:3215223-3215237
CAGTCTTAGCTAAAGAGACTCTCCTGCTTG3215223TTCAGTGCCAACATTCTGGTGGCTGAGGTCTGAGGACACTGCCTG
chr1:3288170-3288183
CATCCTTCCATTCATCCATCCATCCATCCA3288170TTCATGGA-AACATTCAGTGAGCCCTGACTGAACACTGATCCTGG
chr1:3728807-3728821
CTATGTTAAAATATTAAAAAGTTGCAAAAT3728807TTCATTAAAAACATTTACATTTGTATCCTAATGCCAATTTATACA
chr1:3802075-3802088
TAAGGAGTCTGTGATATTTTACAAATTGAC3802075TTCATTTACAA-ATTGAGTCATTTTACAAATTGACTTCAATTTTA
chr1:4194815-4194827
ATCCTTTTAAACCCAATATCAAAGCCAGTG4194815TTC--TGACAACATTTTCCCTGATGTTTAAATGCATTTATACAAA
chr1:4851356-4851370
GAACTGGACATTGAATGAAGCTTGAGGCCA4851356TGCATTGATAACATTTTTAGAGTCTGTTACATTATTTTCTCAAAA
chr1:4905312-4905324
TTTGACATAACATGTCTTTAAGATTTCAAA4905312TT-ATTGA-AACATTTTTGAAATGATGACAAGCTCATTTATAAAT
chr1:4905412-4905426
TACTTGTCTTTAACAATTACATTTGAATTG4905412TTCATTGAAAACAATGTTAGCCATTTTTTTCTTTTAAAAAAGCAA
chr1:5010138-5010151
ATTCTCACCAACGGTACATGCATGTGTATG5010138TTCATTGA-ACCATTATTCACAATAGCAAAGACACAGAATCAACC
chr1:5404168-5404182
TGAGAACCACATGTGTCAGATATTGTAACG5404168TTCATTGTCAACATCATCACGGCAATGAAAAGGAATGCTAGTTCA
chr1:5485975-5485989
AGGCTTCAGAATTAGAGTCTGGGCAGTGTT5485975TTCATTGACAACCCTGATAGATTTTTTTGTTTTTGTGGGAGCCAG
chr1:5524077-5524090
TCGCACCAGGTGGGAATTATGGGAGTACAA5524077TTCA-TGATAACATTTGGGTTTGGGGACACAGAGCTAAACCATAT
chr1:5531274-5531287
CCCAGTAAGGAGTCTACAAGGGGCTGGGAA5531274TTCATT-ACAACAATATTAATACGTGTCTATTATAGACAACGCAG
chr1:6014239-6014252
GACAGAAGCAAAGATTTATGTGCAAGAATA6014239TTCATTGA-AACTTTATTATAATAGAGAAAAATCGAAGCAACCAA
chr1:6087623-6087636
GGGAATTTTTTGGCTGTGGTCTATTTTTTG6087623TTCATTG-CAGCATTGATTACATGTGAATGTGGACTGTTCTTGCA
chr1:6325822-6325835
TAATGAGCTGTGCTAATTCCTCTGGGACAT6325822TTCATCG-CAACATTTTGAGGGTGTCTGAAAGCCAAAGAGATGGG
chr1:6838086-6838098
GCAGGCTGGAGTGCAGTGGTGTGATCTCGG6838086TTCATTG-CAAC-TTCCGCCTTCCAGTTCAAGCAATTGTGCCTCA
chr1:6950061-6950073
GTTAGCACTTCATTGATTTGAAGGCTAGTT6950061TTCATT--CAACATTCCTGCAGTTTGTGTGTGACCTGATTTTAAA
chr1:7138614-7138627
TAACCCTGTTTCTTTAGGCTGGCTATGTCC7138614TTCATTGA-AAGATTGCTGACCTCTCAAAGAATAAAATAAAAGTC
chr1:7268384-7268396
TTGTTCATTTGGTAAACACATACTACATAC7268384TTCATTGA-AA-ATTCTGCAATGATCAGGTCAGTCAAAATGCACA
chr1:7309327-7309340
GTTATTACTGAGGGGATGTTTTTTAAGCCT7309327ATCATTGAC-ACATTTAATTCATTAGGTACCAAATCCAAAGCAAA
chr1:7390649-7390661
TGGGGCATTTCACCTCATTGAATCAAATCA7390649TTCATTG-C-ACATTTGAGTTGACCCCAGTCTCGGATATCTGAAT
chr1:7394389-7394403
TGGAAGGAGGGTCCTAAGGTGACCTCTCCA7394389TTCCTTGGCAACATTTTCGGGACAGTTTTGGTTTCTGTGGCTGCG
chr1:7434172-7434185
GCCTGTGGTGGAAGTCCGGAGTTAGTACAC7434172GTCATTGACAA-ATTGCCCAGGAAGCAGCCGGGCCCCTGATGGAA
chr1:7698174-7698188
TGATTGATTCATATATTCATGTATGACTCT7698174TTCCCTGACAACATTCAAAAAAGCAGTTGCAGACCCAGCTCTCTC
chr1:7709963-7709977
TGCCAGGGAGTGGTTCTGTCAAAGTTAGAA7709963TTCATTGCCAACATTCAAATCTCCAGATTTTCAGCCTCTCTTTAA
chr1:7810452-7810464
CGGTAAGTTGCCGTCTTATAAGCAAAGGGC7810452TTCATTG-CAAC-TTCTCATCCCCAGAGTCATACTCTGTTTGATT
chr1:7826755-7826769
CAGGAATGTTTTGGTCATTGCATTTGCACT7826755TTCATGGACAACTTTTAATTTGATCAGCAAGACATCTTGGAACTC
chr1:7930854-7930868
CTGCTCAAATCATTTAATTTTTATTACTTT7930854TCCATTGTCAACATTCTCTAGCCAAAGACCACCAGGAGCACACTT
chr1:8090289-8090302
GCCATTTGAAAAGTAGCACAGAAAATATAT8090289TTC-TTGGCAACATTTCATTTTTCCTTTTTCTGTTTTTTTGTCTT
chr1:8114934-8114948
TCCTATGCAGCCTAATAATGATACTAGGAT8114934TTCATTGAGAAAATTTTAATTTTAATTTTAGAAAAGTTACTTTTT
chr1:8173136-8173150
GGAATAAACACATCAGAAACGAGCGAGACC8173136TTCATGGAAAACATTATGCAATACGCTTGCCAGACATAAAGACCT
chr1:8327093-8327107
AAGAGGAAGAGTCTTCCCTGGCGCTCTTCA8327093GTCATTTACAACATTTTACAAAACAATGTAGGTAAGGAAGAAGGC
chr1:8468407-8468420
ATCCCACAGGCTGGCCAAGAGCCCGGAATT8468407TTCATT-ACAACTTTCAAAGAGAGCAAGAGGAGGAGGGAAAAAGA
chr1:8592277-8592290
TTTACCTTGCTAGACTCCGTTTGTTAACAT8592277TTCATTTA-AACATTTTACATTCATGTTCATAAGATTGAACCTAT
chr1:8759446-8759460
TACTGAATAAATTAATGAATTACACCAGAG8759446TTCAATGATAACATTAAAAATTGAGTAAAATTATGCTAATTTTCC
chr1:9260588-9260600
TCTAGTCCAGGCGATGATTTGGTCTAAGAC9260588TTCATT-A-AACATTTGTCTATGAGCCCAAATTTCCCCAAATGAC
chr1:9758179-9758193
TAAAATAATAAAGTTATTATGACATCCATA9758179TTCATTCATAACATTTCATTTTTTCTATGCTTTTTTTTTGAGACG
chr1:9774919-9774933
GGCCCCCTTGCTGTGTTAAATATTTCTGAG9774919TTCGTTGCCAACATTTAAAAATCAGGGTTGCCAGGCGCAGTGGCT
chr1:9862262-9862276
TTCATGCTCATAACTGCTCCACTATGCTCT9862262TGCAGTGACAACATTTAGGCAGAACTGAGACCCAGGACTTTCTGA
chr1:10140671-10140684
TCATATGCTGAAGAGATACCTCTACTCATG10140671TTCATTG-CAGCATTATTCCAAATAGCCAAGATATGGAAGCAACC
chr1:10500735-10500749
TTGTAATACCTCAAAACTTTGGTCCCATGT10500735TTCATTTACAACATGATGTCAGAGACTGGTCACAGGCCAATCTGC
chr1:10612672-10612687
CCATTTACTAATTATTAAATATCCATTTCC10612672TTCATGTGCCAACATTTGTGCTAAACATAAAAATACAAAAATAAGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/hg19/2/TTCATTGACAACATT
lang : ja | db : hg19 | k : 2 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.084 | 0.074 | search_plus_done; http://172.18.8.138:28018/match?q=TTCATTGACAACATT&k=2&no_gap=0&offset=0&limit=50
0.102 | 0.018 | search_minus_done; http://172.18.8.138:28018/match?q=AATGTTGTCAATGAA&k=2&no_gap=0&offset=0&limit=0
0.102 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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