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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2021-05-19 09:20:48, GGGenome : Crab-eating macaque spliced RNA, TRaC 21.01 protein coding on macFasRKS1912, D3G 21.01 (Jan, 2021)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

TRaC2101L117d2;na|SYT1|chr11:75970781:76007718:+|spliced::chr11:75970781-76007718(+)
position: 26529-26543
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA26529AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
TRaC2101L117d3;na|SYT1|chr11:75974271:76007718:+|spliced::chr11:75974271-76007718(+)
position: 23039-23053
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA23039AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/macFasRKS1912_Trac2101ProtCoding_spliced_d3g2101/TTCATTGACAACATT
lang : ja | db : macFasRKS1912_Trac2101ProtCoding_spliced_d3g2101 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.007 | 0.007 | search_start;
0.077 | 0.070 | search_plus_done; http://172.18.8.75:28863/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.081 | 0.004 | search_minus_done; http://172.18.8.75:28863/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.083 | 0.002 | cgi_end;

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