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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-04-14 07:58:03, GGGenome : Crab-eating macaque pre-spliced RNA, RefSeq on macFasRKS1912v2, D3G 23.02 (Feb, 2023)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

XM_015437656.2|LOC102132338;102132338|chr16:63370524:63511418:-|prespliced::chr16:63370524-63511418(-)
position: 27232-27246
GCCTCTGGGCCTATATTAGATGGGCCATGC27232TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
XM_005582940.3|LOC102132338;102132338|chr16:63387074:63511418:-|prespliced::chr16:63387074-63511418(-)
position: 27232-27246
GCCTCTGGGCCTATATTAGATGGGCCATGC27232TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
XM_015446088.2|HESX1;102125054|chr2:82723552:82752149:+|prespliced::chr2:82723552-82752149(+)
position: 25928-25942
ACTATGCTGCACTCCAAATACTATTGTGTT25928TTCATTGACAACATTCCCTATTACATATGCATATGAAAAACAGGC
XM_005556483.3|F11;102143421|chr5:182248922:182274145:+|prespliced::chr5:182248922-182274145(+)
position: 12093-12107
GCCTGAGCCACCATGCCCAGCTTGCTATTC12093TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA
XM_005556484.3|F11;102143421|chr5:182248922:182274145:+|prespliced::chr5:182248922-182274145(+)
position: 12093-12107
GCCTGAGCCACCATGCCCAGCTTGCTATTC12093TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA
XM_015430622.2|SYT1;101865424|chr11:75699198:76293064:+|prespliced::chr11:75699198-76293064(+)
position: 244757-244771
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244757AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
XM_015430624.2|SYT1;101865424|chr11:75699198:76293064:+|prespliced::chr11:75699198-76293064(+)
position: 244757-244771
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244757AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
XM_015430625.2|SYT1;101865424|chr11:75699198:76293064:+|prespliced::chr11:75699198-76293064(+)
position: 244757-244771
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244757AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
XM_015430626.2|SYT1;101865424|chr11:75699198:76293064:+|prespliced::chr11:75699198-76293064(+)
position: 244757-244771
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244757AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
XM_045366611.1|SYT1;101865424|chr11:75699198:76293064:+|prespliced::chr11:75699198-76293064(+)
position: 244757-244771
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244757AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
XM_045379572.1|CYP2G2;102125069|chr19:38697275:38711143:-|prespliced::chr19:38697275-38711143(-)
position: 1949-1963
TTCCCTTAGGAGAGCTGTTAACATTATACT1949AATGTTGTCAATGAAAAGCTAAGATAGGCCAGCATGGTGGCTCAC
XM_045379571.1|CYP2G2;102125069|chr19:38697275:38722996:-|prespliced::chr19:38697275-38722996(-)
position: 13802-13816
TTCCCTTAGGAGAGCTGTTAACATTATACT13802AATGTTGTCAATGAAAAGCTAAGATAGGCCAGCATGGTGGCTCAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/macFasRKS1912v2_RefSeq_prespliced_d3g2302/TTCATTGACAACATT
lang : ja | db : macFasRKS1912v2_RefSeq_prespliced_d3g2302 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.084 | 0.075 | search_plus_done; http://172.18.8.78:28938/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.092 | 0.008 | search_minus_done; http://172.18.8.78:28938/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=45
0.097 | 0.005 | cgi_end;

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