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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2022-12-06 09:12:25, GGGenome : Crab-eating macaque genome, CE_1.0 (Jul, 2011)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

chr2
position: 80004272-80004286
ACTATGCTGCACTCCAAATACTATTGTGTT80004272TTCATTGACAACATTCCCTATTACATATGCATATGAAAAACAGGC
chr5
position: 143786337-143786351
CAGAATATATTATCGCTTTGAACACAGATT143786337TTCATTGACAACATTTTGTGGGCATCCATTTAATATTAATATTAA
chr5
position: 160911052-160911066
TAAAACCTCTGATTTTGTGTAACACTCCTT160911052TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGACTACAT
chr5
position: 176594540-176594554
TTTGGACCCCCAGATCAGTCTTCATATTCT176594540TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
chr12
position: 104260694-104260708
GCCTGAGCCACCATGCCCAGCTTGCTATTC104260694TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA
chr16
position: 14305595-14305609
GCCTCTGGGCCTATATTAGATGGGCCATGC14305595TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
chr17
position: 48176872-48176886
TGTTCAAAGTTTTCCCCTCCAATGTATCTT48176872TTCATTGACAACATTCGGATTTATCACATCAATCAGTCAATAAAT
chr17
position: 65446857-65446871
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA65446857TTCATTGACAACATTGCCTGAGGTAACTCACACTGAGGTGACAAC
scaffold144
position: 11414-11428
GTTCCAAGAAACTGCTCTCTAGGAGGTGCA11414TTCATTGACAACATTTCCAAGGAACTCCTTTGTGACGTGTGAGTG
chr11
position: 77243946-77243960
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA77243946AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
chr14
position: 47423552-47423566
GTTTGCTCTATTCACTGTCCTCAACGCTAG47423552AATGTTGTCAATGAACAAGACATATCTATGTTCCTGGAAACTCAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/macaque_CE_1/TTCATTGACAACATT
lang : ja | db : macaque_CE_1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.079 | 0.071 | search_plus_done; http://172.18.8.77:28229/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.009 | search_minus_done; http://172.18.8.77:28229/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=41
0.090 | 0.001 | cgi_end;

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