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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-24 16:14:00, GGGenome : Mouse pre-spliced RNA, RefSeq curated protein coding on mm10, D3G 21.01 (Jan, 2021)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

NM_010586.2|Itpr2;16439|chr6:146108298:146502223:-|prespliced::chr6:146108298-146502223(-)
position: 327134-327148
ATCATGGTATCCACACAGAAGGCCCAGTTA327134AATGTTGTCAATGAAGTGATGACACAAACAGGGAGAATGTGTTCA
NM_019923.4|Itpr2;16439|chr6:146108298:146502223:-|prespliced::chr6:146108298-146502223(-)
position: 327134-327148
ATCATGGTATCCACACAGAAGGCCCAGTTA327134AATGTTGTCAATGAAGTGATGACACAAACAGGGAGAATGTGTTCA
NM_133235.2|Khdrbs2;170771|chr1:32172805:32657738:+|prespliced::chr1:32172805-32657738(+)
position: 212650-212664
TTTTTAAAGACAGCAGGAAATAGCAAATAA212650AATGTTGTCAATGAACAGTGTTTCCAAATGGTACATTAAGTATTC
NM_018779.1|Pde3a;54611|chr6:141249268:141499351:+|prespliced::chr6:141249268-141499351(+)
position: 172260-172274
AAAGTACTATCAGTTTCCTAAATATATCCA172260TTCATTGACAACATTGTTCACTCTTCCATAAACATCTGCTGGTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/mm10_RefSeqCuratedProtCoding_prespliced_d3g2101/AATGTTGTCAATGAA
lang : ja | db : mm10_RefSeqCuratedProtCoding_prespliced_d3g2101 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.75:28866/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.006 | search_minus_done; http://172.18.8.75:28866/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=47
0.088 | 0.001 | cgi_end;

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