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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-23 19:15:02, GGGenome : Mouse pre-spliced RNA, RefSeq curated protein coding on GRCm39/mm39, D3G 23.02 (Feb, 2023)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

NM_018779.2|Pde3a;54611|chr6:141194994:141451666:+|prespliced::chr6:141194994-141451666(+)
position: 172260-172274
AAAGTACTATCAGTTTCCTAAATATATCCA172260TTCATTGACAACATTGTTCACTCTTCCATAAACATCTGCTGGTTA
NM_010586.2|Itpr2;16439|chr6:146009796:146403721:-|prespliced::chr6:146009796-146403721(-)
position: 327134-327148
ATCATGGTATCCACACAGAAGGCCCAGTTA327134AATGTTGTCAATGAAGTGATGACACAAACAGGGAGAATGTGTTCA
NM_019923.4|Itpr2;16439|chr6:146009796:146403721:-|prespliced::chr6:146009796-146403721(-)
position: 327134-327148
ATCATGGTATCCACACAGAAGGCCCAGTTA327134AATGTTGTCAATGAAGTGATGACACAAACAGGGAGAATGTGTTCA
NM_133235.3|Khdrbs2;170771|chr1:32211802:32697650:+|prespliced::chr1:32211802-32697650(+)
position: 212734-212748
TTTTTAAAGACAGCAGGAAATAGCAAATAA212734AATGTTGTCAATGAACAGTGTTTCCAAATGGTACATTAAGTATTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/mm39_RefSeqCuratedProtCoding_prespliced_d3g2302/TTCATTGACAACATT
lang : en | db : mm39_RefSeqCuratedProtCoding_prespliced_d3g2302 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.080 | 0.071 | search_plus_done; http://172.18.8.78:28943/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.084 | 0.004 | search_minus_done; http://172.18.8.78:28943/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=49
0.086 | 0.002 | cgi_end;

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