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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-22 03:58:57, GGGenome : Mouse pre-spliced RNA, RefSeq curated protein coding on GRCm39/mm39, D3G 24.03 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

NM_133235.3|Khdrbs2;170771|chr1:32211802:32697650:+|prespliced::chr1:32211802-32697650(+)
position: 212734-212748
TTTTTAAAGACAGCAGGAAATAGCAAATAA212734AATGTTGTCAATGAACAGTGTTTCCAAATGGTACATTAAGTATTC
NM_010586.2|Itpr2;16439|chr6:146009796:146403721:-|prespliced::chr6:146009796-146403721(-)
position: 327134-327148
ATCATGGTATCCACACAGAAGGCCCAGTTA327134AATGTTGTCAATGAAGTGATGACACAAACAGGGAGAATGTGTTCA
NM_019923.4|Itpr2;16439|chr6:146009796:146403721:-|prespliced::chr6:146009796-146403721(-)
position: 327134-327148
ATCATGGTATCCACACAGAAGGCCCAGTTA327134AATGTTGTCAATGAAGTGATGACACAAACAGGGAGAATGTGTTCA
NM_018779.2|Pde3a;54611|chr6:141194994:141451666:+|prespliced::chr6:141194994-141451666(+)
position: 172260-172274
AAAGTACTATCAGTTTCCTAAATATATCCA172260TTCATTGACAACATTGTTCACTCTTCCATAAACATCTGCTGGTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/mm39_RefSeqCuratedProtCoding_prespliced_d3g2403/AATGTTGTCAATGAA
lang : ja | db : mm39_RefSeqCuratedProtCoding_prespliced_d3g2403 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.078 | 0.069 | search_plus_done; http://172.18.8.77:28980/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.083 | 0.005 | search_minus_done; http://172.18.8.77:28980/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=47
0.084 | 0.001 | cgi_end;

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