GGGenome | Results

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2025-04-08 12:54:10, GGGenome : Mouse genome, GRCm39/mm39, D3G 23.02 (Feb, 2023)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

chr2
position: 131322033-131322047

AGACAAATTAAGACTGTATTGTATCATGGT131322033TTCATTGACAACATTTAAAATTGTTACATATTTCAAAATTTTTTA

chr5
position: 42475572-42475586

TAGAATCAGTGTAAGCCATCCCTACACTTA42475572TTCATTGACAACATTCATGCAATCTTCAGTGTTCATTACTTTGCT

chr6
position: 141367254-141367268

AAAGTACTATCAGTTTCCTAAATATATCCA141367254TTCATTGACAACATTGTTCACTCTTCCATAAACATCTGCTGGTTA

chr6
position: 146076574-146076588

TGAACACATTCTCCCTGTTTGTGTCATCAC146076574TTCATTGACAACATTTAACTGGGCCTTCTGTGTGGATACCATGAT

chr10
position: 46938994-46939008

TATTTCTTTCTGTTTGTTTATATGATGGAC46938994TTCATTGACAACATTTCATATATGTAACCATCCTGTATCTCTGTA

chr14
position: 109479096-109479110

TGCTGCTGGAATCTCTCCCTGGAGGGTGTG109479096TTCATTGACAACATTGCCCACTGAGAGTGACAACCTCAGCAGCCA

chr1
position: 32424536-32424550

TTTTTAAAGACAGCAGGAAATAGCAAATAA32424536AATGTTGTCAATGAACAGTGTTTCCAAATGGTACATTAAGTATTC

chr2
position: 47223059-47223073

ATATCTATTTATTCATTGATGTAGCTTTCA47223059AATGTTGTCAATGAACACTGTTACTTCGTTGAGCACATGAAAAGT

chr3
position: 39374199-39374213

GTTGCCCCAGATTCAAGCTGCATGTTGACC39374199AATGTTGTCAATGAACTTCAACTACAAGTTCTGAGGCAGAATCTA

chr3
position: 42731951-42731965

TTAAACATCAGAGAAATGAAAAATAAGTAA42731951AATGTTGTCAATGAATAAACATCCCTGTAAGTTAAGGTTTGCAAT

chr5
position: 8430809-8430823

TAGCATCCATGCCCCCAAGCCAAAAGCATC8430809AATGTTGTCAATGAAACATTACTAAAGTTTAAAGTACATGTTGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.78:28945/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.091 | 0.008 | search_minus_done; http://172.18.8.78:28945/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=44
0.094 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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