GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-03-29 10:23:55, GGGenome : Mouse genome, NCBI37/mm9 (Jul, 2007)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

chr2:131305849-131305863
AGACAAATTAAGACTGTATTGTATCATGGT131305849TTCATTGACAACATTTAAAATTGTTACATATTTCAAAATTTTTTA
chr5:42709468-42709482
TAGAATCAGTGTAAGCCATCCCTACACTTA42709468TTCATTGACAACATTCATGCAATCTTCAGTGTTCATTACTTTGCT
chr6:141370049-141370063
AAAGTACTATCAGTTTCCTAAATATATCCA141370049TTCATTGACAACATTGTTCACTCTTCCATAAACATCTGCTGGTTA
chr6:146123598-146123612
TGAACACATTCTCCCTGTTTGTGTCATCAC146123598TTCATTGACAACATTTAACTGGGCCTTCTGTGTGGATACCATGAT
chr10:46782704-46782718
TATTTCTTTCTGTTTGTTTATATGATGGAC46782704TTCATTGACAACATTTCATATATGTAACCATCCTGTATCTCTGTA
chr14:109640881-109640895
TGCTGCTGGAATCTCTCCCTGGAGGGTGTG109640881TTCATTGACAACATTGCCCACTGAGAGTGACAACCTCAGCAGCCA
chr1:32442300-32442314
TTTTTAAAGACAGCAGGAAATAGCAAATAA32442300AATGTTGTCAATGAACAGTGTTTCCAAATGGTACATTAAGTATTC
chr2:47188567-47188581
ATATCTATTTATTCATTGATGTAGCTTTCA47188567AATGTTGTCAATGAACACTGTTACTTCGTTGAGCACATGAAAAGT
chr3:39218972-39218986
GTTGCCCCAGATTCAAGCTGCATGTTGACC39218972AATGTTGTCAATGAACTTCAACTACAAGTTCTGAGGCAGAATCTA
chr3:42581438-42581452
TTAAACATCAGAGAAATGAAAAATAAGTAA42581438AATGTTGTCAATGAATAAACATCCCTGTAAGTTAAGGTTTGCAAT
chr5:8380809-8380823
TAGCATCCATGCCCCCAAGCCAAAAGCATC8380809AATGTTGTCAATGAAACATTACTAAAGTTTAAAGTACATGTTGAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/mm9/TTCATTGACAACATT
lang : ja | db : mm9 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.834 | 0.826 | search_plus_done; http://172.18.8.78:28020/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.839 | 0.005 | search_minus_done; http://172.18.8.78:28020/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=44
0.840 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).