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Search example
URIs
- http[s]://GGGenome.dbcls.jp/db/k/[strand]/[nogap]/sequence[.format][.download]
- db:
hg38, mm10, dm3, ce10, TAIR10, pombe, refseq, etc. (default: hg38)
List of available databases
- k:
Maximum number of mismatches/gaps. (default: 0)
- strand:
'+' ('plus') or '-' ('minus') to search specified strand only. (optional)
- nogap:
No gaps. Allow only k mismatches. (optional)
- sequence:
Nucleotide sequence, case insensitive.
- format:
html, txt, csv, bed, gff, json. (default: html)
- download:
Download result as a file. (optional)
- Example 1: https://GGGenome.dbcls.jp/TTCATTGACAACATT
- Search TTCATTGACAACATT in
- human genome hg38 (default),
- with perfect matches (default),
- output in html format (default).
- Example 2: https://GGGenome.dbcls.jp/mm10/2/+/nogap/TTCATTGACAACATTGCGT.txt
- Search TTCATTGACAACATTGCGT in
- mouse genome mm10,
- allowing 2 mismatches,
- search for + strand only,
- with nogap (allow only mismatches),
- output in tab-delimited txt format.
What's new
- 2025-01-28 Database updated to RefSeq rel. 228 (Jan, 2025).
- 2024-08-19 Databases updated to GENCODE human 46 (May, 2024) and mouse M35 (May, 2024).
- 2024-08-19 Database updated to DDBJ rel. 134.0 (Mar, 2024).
- 2024-05-31 Human genome T2T-CHM13v2.0 (Jan, 2022) is available.
- 2024-05-04 Database updated to RIKEN D3G 24.03 (Mar, 2024).
- 2021-05-10 The new logo for GGGenome is out.
- 2020-11-07 Mouse genome GRCm39/mm39 (Jun, 2020) is available.
- 2020-03-21 SARS-CoV-2 (SARS coronavirus 2) genome is available -
Update history
- 2020-03-21 Human Japanese Reference Genome JG1 is available.
- News archive and Database update history
GGGenome by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).