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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-11-24 06:11:54, GGGenome : Proboscis monkey genome, Charlie1.0/nasLar1 (Nov, 2014)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

chr2:75500340-75500354
ACTATGCTGCACTCCAAATACTATTGTGTT75500340TTCATTGACAACATTCCCTATTACATATGCATATGAAAAACAGGC
chr5:135159794-135159808
CAGAATATATTATCGCTTTGAGCACAGATT135159794TTCATTGACAACATTTTGTGGGCATCCATTTAATATTAATATTAA
chr5:151231824-151231838
TAAAACCTCTGATTTTGTGTAACACTCCTT151231824TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGACTACAT
chr6:43025528-43025542
TTAAGTCTTATTAACTTAAATTGCTATTAT43025528TTCATTGACAACATTAATAACTGTATAACAAACTATGCAAGCTTT
chr15:93336292-93336306
AATTAAAACAAGTGTTCAATTTTCATGTCT93336292TTCATTGACAACATTTGAGATGAAATAATACTGAAAAGTAGGACT
chr16:12402320-12402334
GCCTCTGGGCCTATGTTAGATGGGCCATGC12402320TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
chr17:60398302-60398316
GCAGTCTGGAGGTTCTCCCTGGAGGCTCTA60398302TTCATTGACAACATTGCCTGAGGTAACTCACACTGAGGTGACAAC
chr18:4267498-4267512
AGCTACAGCACTCTACAGTGGACACCCACA4267498TTCATTGACAACATTATTTCCACAGGAAAACTTACTCTAATTTCA
chr1:79671209-79671223
TGGAGTAGAGGGCGGAAACTCATGCCCAGC79671209AATGTTGTCAATGAAAGTCAACACAGTAGGGGAAAAAAATGGGGA
chr4:46769730-46769744
ACTTGCCTTGACACTGAAAAGTCTAATTGC46769730AATGTTGTCAATGAAGGCTGAATAACTAGGATCTGTGAAATGTAC
chr6:9305840-9305854
GAGGGCCTTTCCAGCTCCAAGGTCAATGGC9305840AATGTTGTCAATGAAAGATCAGCAGGTCAGTGCATTATACCCAGA
chr7:13946024-13946038
ATACCTGTCTGCTAACAAAATTAATTTCAG13946024AATGTTGTCAATGAATGAAGTGCATGTTCTCTACTGTTTATGAGA
chr18:61148046-61148060
AATATTATAGTCTCCATAAAGAACATAACC61148046AATGTTGTCAATGAATTTGTGGTTATATTTGATGACCACTGATTT
chrUn_JMHX01173011v1:382-396
AATTCTGTTTAATTTCTGCAGAACTTCATG382AATGTTGTCAATGAAAGAATATGAAGACTGATTTGGGGGTCCAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/nasLar1/TTCATTGACAACATT
lang : ja | db : nasLar1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.084 | 0.075 | search_plus_done; http://172.18.8.78:28770/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.090 | 0.006 | search_minus_done; http://172.18.8.78:28770/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=42
0.091 | 0.002 | cgi_end;

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