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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2021-12-01 13:21:38, GGGenome : Gibbon genome, GGSC Nleu3.0/nomLeu3 (Oct, 2012)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

chr5:111678540-111678554
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA111678540TTCATTGACAACATTGCCTGAGGTAACTCACACTGAGGTGACAAC
chr6:9134900-9134914
CATAGGTTGATAAAGAATCATGCATATATA9134900TTCATTGACAACATTGAATATCCATGAAACCATTGTCCTCACTTG
chr7b:60076820-60076834
TTGCTGTGAAGGATAAGGGATATGATTGGA60076820TTCATTGACAACATTGGAATAGATATGGTAGATTATTATATCAGT
chr7b:72676456-72676470
CAGAATATATTATCACTTTAAACACAGATT72676456TTCATTGACAACATTTTGTGGGCATCCATTTAATATTAATATTAA
chr7b:105514839-105514853
TTTGGACCCCCAAATCAGTCTTCATTTTCT105514839TTCATTGACAACATTCATTAAGTTCTGCAGAAATTAAACAGAATT
chr8:37133981-37133995
ATATTTTAAAATTCATCCATATTTCCACTT37133981TTCATTGACAACATTATTAAGTTTTTTGTGTCTTTTTTCAAATTA
chr17:29892064-29892078
GCAGTGCCTGGCCTGAGTCAGCACATTAGC29892064TTCATTGACAACATTGGTTCGTTCAACAAATATTGCCTGAGAAGA
chr6:8935821-8935835
GAGGGCCTTTCCAGCTCCAAAGTCGATGGC8935821AATGTTGTCAATGAAAGATCAGCAGGTCAGTGCATTATACCCAGG
chr8:78331435-78331449
TTGAGTACGTAGAGGTTCTCAGCCCTTCTC78331435AATGTTGTCAATGAAGTAGATTGAGCTTTAATTGTATATTTAGGT
chr17:17801221-17801235
AAGTTCCAAAGTAAATTTGCATTATATGCT17801221AATGTTGTCAATGAATAGAATATAAATGTGCTTCTTTGCTGCAAT
chr19:67656798-67656812
TTCTGCCCTTTCACAAATAAACATAAAATC67656798AATGTTGTCAATGAAGCATGACTCATCTAATATGGGCCCAGAGGC
chr20:70593813-70593827
TGCTAGGAGTGATAAGGTGTGGCTGATGGC70593813AATGTTGTCAATGAATTATCAGGCTTTCCTCAAACTCCTTTCGTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/nomLeu3/TTCATTGACAACATT
lang : ja | db : nomLeu3 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.007 | 0.007 | search_start;
0.082 | 0.075 | search_plus_done; http://172.18.8.78:28034/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.090 | 0.007 | search_minus_done; http://172.18.8.78:28034/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=43
0.091 | 0.001 | cgi_end;

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