GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-11-24 16:13:35, GGGenome : Pika genome, OchPri3.0/ochPri3 (May, 2012)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

JH802062:2540566-2540580
ACAAAATTATACCGTGGGTTTGTGTAATTA2540566AATGTTGTCAATGAATGCACTTTGGGCTCATCTTCTCAGGCTGGC
JH802062:73924553-73924567
AGTCATCATGCCAGGCCCCTGATTTGTATT73924553AATGTTGTCAATGAATCGCCACAATGATTTATTTTCAGTATAATT
JH802086:2853227-2853241
CTGGCTGGCTGGCTGAATGGAGATGACTTG2853227AATGTTGTCAATGAAGGCCTCTGGTAATGGGAGCTTGATCTTATC
JH802101:9225024-9225038
ATTCTGTGACTGTGGCTCTTCTTTTGCTTG9225024AATGTTGTCAATGAAATGTTTGGAATCTTTCTAAAGTTGCCTCAT
JH802142:6224454-6224468
GAAGGTGCAGAAAGAGAAGCTAGGTTTAAA6224454AATGTTGTCAATGAAATAATAAACGAAAACTTCCCTAATCTGGAG
JH802061:3272512-3272526
AGTGTGTTAGAAAATGGAGCATAAGTCCTC3272512TTCATTGACAACATTTGCTTTGTATTTATTGTTCTTTCATCCCTG
JH802067:40758941-40758955
TAACTTGTTTACTTTTAAAAAGACACTTAT40758941TTCATTGACAACATTAAATGGTTTCACAATTTTTAACCCATGATT
JH802081:13397716-13397730
ATAATATTTTCTTTTATTTCAACTCAGTAT13397716TTCATTGACAACATTTCCTTTTTTGGAAAGCACTGTGGAATTCAA
JH802084:18547005-18547019
CACAAAAGTCCATTTAAGCACTAACTGCAC18547005TTCATTGACAACATTCAACTAGACATTATTTTTACAAACCGATGT
JH802086:24593974-24593988
TCTCACGCCACTTCCACAAAGGAATTCAGC24593974TTCATTGACAACATTTTGCGGGACTATTTGTACGGATTCTTTTCA
JH802100:5488774-5488788
GTTTTTCTTCTGACAGTTTTATTATTCTTT5488774TTCATTGACAACATTTTTTTTCACCCACCCACCTTCAAAACTCAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ochPri3/AATGTTGTCAATGAA
lang : ja | db : ochPri3 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.085 | 0.076 | search_plus_done; http://172.18.8.77:28051/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.090 | 0.005 | search_minus_done; http://172.18.8.77:28051/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=45
0.092 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).