GGGenome | Results

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2025-04-09 07:04:07, GGGenome : Rock hyrax genome, Broad/proCap1 (Jul, 2008)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

scaffold_50138:5812-5826

TTGTACTAGTCAGTATCTATCCGGAAGTAC5812AATGTTGTCAATGAAATGTTTACAAGACCTCTTAATACAACTATT

scaffold_616:120666-120680

TTAATTGCTTTGCTTCTTTTACAAAGAACT120666TTCATTGACAACATTTTAACTTCAAGTTTTCTAGCACTATAGTTT

scaffold_2520:54387-54401

GCTTCATGGATTTTTTTCATCTCATAATCA54387TTCATTGACAACATTCATCTCATCAATCTTCTCCATATGTGGAAC

scaffold_10758:50246-50260

ATATGTATTTTTTTCTGAACATGTCATGCC50246TTCATTGACAACATTAAATTACACATGCCATATACTAAACTTGTT

scaffold_23384:15529-15543

TTTTTTTAACTCTACTATCCAACTACTCTG15529TTCATTGACAACATTTACCTGGCAGTAACAAATGATGAGGTACAA

scaffold_30752:10888-10902

CATATCAAGTGGTTTTTAAGAGGTCACATT10888TTCATTGACAACATTAGGTTGGCCTTGCAATTCCTGTAACTTCAG

scaffold_31685:16534-16548

GGCTGGATGAGAACAAATTGTTTCTTAAAT16534TTCATTGACAACATTTGAATGGCAGGCGTTCTCTGTCACTAGTGT

scaffold_35890:16358-16372

ACATGCAAAAATCTGTCACTTGTTTTACAC16358TTCATTGACAACATTCTTCAAGAATGGCTGAAGAAGTTCATTGAC

scaffold_47811:10498-10512

GACAATCTTTCTGACATTTTAAGGTTATTG10498TTCATTGACAACATTTATTGCTTAGGCTAAAGAGAAGAAAGAGAC

scaffold_60200:613-627

TTCAGGGTATTGAATATTTCATCCCATTGC613TTCATTGACAACATTATTTCTGCAGAGAAGTCAGAGGAAAGTCTA

scaffold_67835:22-36

GATGAAGCTGGTTTCAACATT22TTCATTGACAACATTTCTTTTAAGGTCCCGGGTTTTGAAAGATTT

scaffold_127552:6327-6341

CCTTCCTTGTAGGGGTATAGATGCCATCTT6327TTCATTGACAACATTGTACTTCAGAATAGGGCTTGAAATGTTCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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BED format: Link | Download
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Debug Info:

0.009 | 0.009 | search_start;
0.080 | 0.072 | search_plus_done; http://172.18.8.77:28057/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.085 | 0.005 | search_minus_done; http://172.18.8.77:28057/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=49
0.088 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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