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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-24 00:45:01, GGGenome : Prokaryotic TogoGenome from RefSeq 62 (Nov, 2013)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

rs:NC_003997 Bacillus anthracis str. Ames chromosome, complete genome.
taxonomy:"198094", bioproject:"PRJNA57909", refseq:"NC_003997.3"
NC_003997.3:1526492-1526506
GCTATCTTCAATGAATATTGTCCCTTCTGG1526492AATGTTGTCAATGAACACCGTATTGTTAGCTGGAACCGTTCCGAT
rs:NC_005945 Bacillus anthracis str. Sterne chromosome, complete genome.
taxonomy:"260799", bioproject:"PRJNA58091", refseq:"NC_005945.1"
NC_005945.1:1526569-1526583
GCTATCTTCAATGAATATTGTCCCTTCTGG1526569AATGTTGTCAATGAACACCGTATTGTTAGCTGGAACCGTTCCGAT
rs:NC_007530 Bacillus anthracis str. 'Ames Ancestor' chromosome, complete genome.
taxonomy:"261594", bioproject:"PRJNA58083", refseq:"NC_007530.2"
NC_007530.2:1526615-1526629
GCTATCTTCAATGAATATTGTCCCTTCTGG1526615AATGTTGTCAATGAACACCGTATTGTTAGCTGGAACCGTTCCGAT
rs:NC_007355 Methanosarcina barkeri str. Fusaro chromosome, complete genome.
taxonomy:"269797", bioproject:"PRJNA57715", refseq:"NC_007355.1"
NC_007355.1:390172-390186
GATAATGAAGAGGAAATAAATGTTCATCAA390172AATGTTGTCAATGAAGTAATGAAACAATGTAGTATTATTCCGGTA
rs:NC_002663 Pasteurella multocida subsp. multocida str. Pm70 chromosome, complete genome.
taxonomy:"272843", bioproject:"PRJNA57627", refseq:"NC_002663.1"
NC_002663.1:2055298-2055312
TATTTGGGCGTGTCAGTAGATAATGTCGAA2055298AATGTTGTCAATGAATTGGTGACAGGTGCGACAAGATTAAAATTG
rs:NC_005957 Bacillus thuringiensis serovar konkukian str. 97-27 chromosome, complete genome.
taxonomy:"281309", bioproject:"PRJNA58089", refseq:"NC_005957.1"
NC_005957.1:1552756-1552770
GCTATCTTCAATAAATATTGTCCCTTCTGG1552756AATGTTGTCAATGAACACCGTATTGTTAGCTGGAACCGTTCCGAT
rs:NC_006274 Bacillus cereus E33L chromosome, complete genome.
taxonomy:"288681", bioproject:"PRJNA58103", refseq:"NC_006274.1"
NC_006274.1:1551374-1551388
GCTATCTTCAATGAATATAGTCCCTTCTGG1551374AATGTTGTCAATGAACACCGTATTGTTAGCTGGAACCGTTCCGGT
rs:NC_016792 Bacillus cereus NC7401 plasmid pNCcld, complete sequence.
taxonomy:"334406", bioproject:"PRJNA82815", refseq:"NC_016792.1"
NC_016792.1:233936-233950
GCTATCTTCAATGAATATTGTCCCTTCTGG233936AATGTTGTCAATGAACACCGTATTGTTAGCTGGAACCGTTCCGAT
rs:NC_016779 Bacillus cereus F837/76 chromosome, complete genome.
taxonomy:"347495", bioproject:"PRJNA83611", refseq:"NC_016779.1"
NC_016779.1:1502330-1502344
GCTATCTTCAATGAATATTGTCCCTTCTGG1502330AATGTTGTCAATGAACACCGTATTGTTAGCTGGAACCGTTCCGAT
rs:NC_012673 Exiguobacterium sp. AT1b chromosome, complete genome.
taxonomy:"360911", bioproject:"PRJNA59093", refseq:"NC_012673.1"
NC_012673.1:2968404-2968418
GCGGGATTTTTTTATTTTTTGTTGAAAGGA2968404AATGTTGTCAATGAAACCGAAGCTGACCGAGACGGGTCATCACCA
rs:NC_011973 Bacillus cereus Q1 plasmid pBc239, complete sequence.
taxonomy:"361100", bioproject:"PRJNA58529", refseq:"NC_011973.1"
NC_011973.1:78831-78845
GCTATCTTCAATGAATATAGTACCTTCTGG78831AATGTTGTCAATGAACACCGTATTGTTAGCTGGAACAGTTCCTAT
rs:NC_019678 Rivularia sp. PCC 7116 chromosome, complete genome.
taxonomy:"373994", bioproject:"PRJNA182929", refseq:"NC_019678.1"
NC_019678.1:1437160-1437174
AAGGAATTACCGCAAATTAAGGTTTGTACG1437160AATGTTGTCAATGAAAAATATGTTTCGATTTGTATCTCCGATAAT
rs:NC_009659 Janthinobacterium sp. Marseille chromosome, complete genome.
taxonomy:"375286", bioproject:"PRJNA58603", refseq:"NC_009659.1"
NC_009659.1:2054778-2054792
AAGTATTTGGCGACGTCATTCGCAATCGAG2054778AATGTTGTCAATGAACCGCGCGTCATCAGCATTTGTTTGCCGATT
rs:NC_009662 Nitratiruptor sp. SB155-2, complete genome.
taxonomy:"387092", bioproject:"PRJNA58861", refseq:"NC_009662.1"
NC_009662.1:863923-863937
CAAAAAATCGAGCAGCTTCCGCCTATACCA863923AATGTTGTCAATGAATTGCAGGAGTTGTACTATTCAGATATGTAC
rs:NC_011655 Bacillus cereus AH187 plasmid pAH187_270, complete sequence.
taxonomy:"405534", bioproject:"PRJNA58753", refseq:"NC_011655.1"
NC_011655.1:178658-178672
GCTATCTTCAATGAATATTGTCCCTTCTGG178658AATGTTGTCAATGAACACCGTATTGTTAGCTGGAACCGTTCCGAT
rs:NC_011773 Bacillus cereus AH820 chromosome, complete genome.
taxonomy:"405535", bioproject:"PRJNA58751", refseq:"NC_011773.1"
NC_011773.1:1594115-1594129
GCTATCTTCAATGAATATTGTCCCTTCTGG1594115AATGTTGTCAATGAACACCGTATTGTTAGCTGGAACCGTTCCGAT
rs:NC_014228 Xenorhabdus nematophila ATCC 19061 chromosome, complete genome.
taxonomy:"406817", bioproject:"PRJNA49133", refseq:"NC_014228.1"
NC_014228.1:2243844-2243858
TCAGGAGAAATGGCTTCGCCACCCACCATC2243844AATGTTGTCAATGAACGCCACTTTTCTTGAGTTAAGTGCGGCAGT
rs:NC_008600 Bacillus thuringiensis str. Al Hakam chromosome, complete genome.
taxonomy:"412694", bioproject:"PRJNA58795", refseq:"NC_008600.1"
NC_008600.1:1575917-1575931
GCTATCTTCAATGAATATAGTCCCTTCTGG1575917AATGTTGTCAATGAACACCGTATTATTAGCTGGAATAGTTCCTAT
rs:NC_013216 Desulfotomaculum acetoxidans DSM 771 chromosome, complete genome.
taxonomy:"485916", bioproject:"PRJNA59109", refseq:"NC_013216.1"
NC_013216.1:2580031-2580045
TCCTGTACCTTGCCGGTAAAAACATTTTTT2580031AATGTTGTCAATGAATTAAAAGCGGAATTATCATCCATTCTATGA
rs:NZ_CM000716 Bacillus cereus BGSC 6E1 chromosome, whole genome shotgun sequence.
taxonomy:"526970", bioproject:"PRJNA55157", refseq:"NZ_CM000716.1"
NZ_CM000716.1:1452609-1452623
GCTATCTTCAATGAATATTGTCCCTTCTGG1452609AATGTTGTCAATGAACACTGTATTGTTAGCTGGAACCGTTCCGAT
rs:NZ_CM000714 Bacillus cereus m1293 chromosome, whole genome shotgun sequence.
taxonomy:"526973", bioproject:"PRJNA55163", refseq:"NZ_CM000714.1"
NZ_CM000714.1:1462630-1462644
GCTATCTTCAATGAATATTGTCCCTTCTGG1462630AATGTTGTCAATGAACACCGTATTGTTAGCTGGAACCGTTCCGAT
rs:NZ_CM000730 Bacillus cereus Rock3-28 chromosome, whole genome shotgun sequence.
taxonomy:"526983", bioproject:"PRJNA55183", refseq:"NZ_CM000730.1"
NZ_CM000730.1:5839375-5839389
GCTATCTTCAATGAATATAGTACCTTCTGG5839375AATGTTGTCAATGAACAACGTATTGTTAGCTGGAACAGTTCCTAT
rs:NZ_CM000732 Bacillus cereus Rock3-42 chromosome, whole genome shotgun sequence.
taxonomy:"526985", bioproject:"PRJNA55187", refseq:"NZ_CM000732.1"
NZ_CM000732.1:1459954-1459968
GCTATCTTCAATGAATATTGTCCCTTCTGG1459954AATGTTGTCAATGAACACTGTATTGTTAGCTGGAACCGTTCCGAT
rs:NZ_CM000739 Bacillus cereus AH1271 chromosome, whole genome shotgun sequence.
taxonomy:"526992", bioproject:"PRJNA55201", refseq:"NZ_CM000739.1"
NZ_CM000739.1:1433951-1433965
GCTATCTTCAATGAATATAGTACCTTCTGG1433951AATGTTGTCAATGAACAACGTATTGTTAGCTGGAACAGTTCCTAT
rs:NZ_CM000739 Bacillus cereus AH1271 chromosome, whole genome shotgun sequence.
taxonomy:"526992", bioproject:"PRJNA55201", refseq:"NZ_CM000739.1"
NZ_CM000739.1:5188056-5188070
GCTATCTTCAATGAATATTGTCCCTTCTGG5188056AATGTTGTCAATGAACACCGTATTGTTAGCTGGAACCGTTCCGAT
rs:NZ_CM000740 Bacillus cereus AH1272 chromosome, whole genome shotgun sequence.
taxonomy:"526993", bioproject:"PRJNA55203", refseq:"NZ_CM000740.1"
NZ_CM000740.1:5464119-5464133
GCTATCTTCAATGAATATTGTCCCTTCTGG5464119AATGTTGTCAATGAACACCGTATTGTTAGCTGGAACCGTTCCGAT
rs:NZ_CM000757 Bacillus thuringiensis serovar pulsiensis BGSC 4CC1 chromosome, whole genome shotgun sequence.
taxonomy:"527028", bioproject:"PRJNA55237", refseq:"NZ_CM000757.1"
NZ_CM000757.1:1472871-1472885
GCTATCTTCAATGAATATTGTCCCTTCTGG1472871AATGTTGTCAATGAACACCGTATTGTTAGCTGGAACCGTTCCGAT
rs:NZ_CM000755 Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1 chromosome, whole genome shotgun sequence.
taxonomy:"527029", bioproject:"PRJNA55233", refseq:"NZ_CM000755.1"
NZ_CM000755.1:1427234-1427248
GCTATCTTCAATGAATATTGTCCCTTCTGG1427234AATGTTGTCAATGAACAACGTATTGTTAGCTGGAACCGTTCCGAT
rs:NC_012472 Bacillus cereus 03BB102, complete genome.
taxonomy:"572264", bioproject:"PRJNA59299", refseq:"NC_012472.1"
NC_012472.1:1523972-1523986
GCTATCTTCAATGAATATTGTCCCTTCTGG1523972AATGTTGTCAATGAACACTGTATTGTTAGCTGGAACCGTTCCGAT
rs:NC_012659 Bacillus anthracis str. A0248, complete genome.
taxonomy:"592021", bioproject:"PRJNA59385", refseq:"NC_012659.1"
NC_012659.1:1526515-1526529
GCTATCTTCAATGAATATTGTCCCTTCTGG1526515AATGTTGTCAATGAACACCGTATTGTTAGCTGGAACCGTTCCGAT
rs:NC_014376 Clostridium saccharolyticum WM1 chromosome, complete genome.
taxonomy:"610130", bioproject:"PRJNA51419", refseq:"NC_014376.1"
NC_014376.1:4338396-4338410
AACCTCGGAACCTGCCTGTGTAAAACGGAA4338396AATGTTGTCAATGAACAACAGCACATCCTTACCACCCTGGTCACG
rs:NC_014335 Bacillus cereus biovar anthracis str. CI chromosome, complete genome.
taxonomy:"637380", bioproject:"PRJNA50615", refseq:"NC_014335.1"
NC_014335.1:1523185-1523199
GCTATCTTCAATGAATATTGTCCCTTCTGG1523185AATGTTGTCAATGAACACCGTATTGTTAGCTGGAACCGTTCCGAT
rs:NC_014833 Ruminococcus albus 7 chromosome, complete genome.
taxonomy:"697329", bioproject:"PRJNA51721", refseq:"NC_014833.1"
NC_014833.1:2720132-2720146
CACAAAGTCGCGGTCATTCTTGTTCTGCTC2720132AATGTTGTCAATGAATGACTTGTCTATCTTCACAATATCAACAGG
rs:NC_015276 Marinomonas mediterranea MMB-1 chromosome, complete genome.
taxonomy:"717774", bioproject:"PRJNA64753", refseq:"NC_015276.1"
NC_015276.1:2021277-2021291
ATGCCTTTGGTGTTCAGCGGCATTGAAAAG2021277AATGTTGTCAATGAAGTGGGTTCAGGCGTGGCGATTCGCGCCAAA
rs:NC_015703 Runella slithyformis DSM 19594 chromosome, complete genome.
taxonomy:"761193", bioproject:"PRJNA68317", refseq:"NC_015703.1"
NC_015703.1:1488469-1488483
GCCGATACCCCCCCCGCACCGATCAAGGGG1488469AATGTTGTCAATGAAGATGATAAAGCCGAATTGGTATTGGGGTAT
rs:NC_014319 Leuconostoc gasicomitatum LMG 18811, complete genome.
taxonomy:"762550", bioproject:"PRJNA50385", refseq:"NC_014319.1"
NC_014319.1:1802133-1802147
AACTTCAGATCCAGCCTGTGTGAAACGGAA1802133AATGTTGTCAATGAACAACAACACATCCTTACCTTCGTCATCACG
rs:NC_017729 Bacillus anthracis str. H9401 chromosome, complete genome.
taxonomy:"768494", bioproject:"PRJNA162021", refseq:"NC_017729.1"
NC_017729.1:1517274-1517288
GCTATCTTCAATGAATATTGTCCCTTCTGG1517274AATGTTGTCAATGAACACCGTATTGTTAGCTGGAACCGTTCCGAT
rs:NC_017847 Acinetobacter baumannii MDR-TJ chromosome, complete genome.
taxonomy:"889738", bioproject:"PRJNA162739", refseq:"NC_017847.1"
NC_017847.1:2761127-2761141
TTCAAGCTTGATGTCAAGACCATGGCGCAA2761127AATGTTGTCAATGAATGACTGCAATGCTGGTGCATCACTTAACAT
rs:NC_017312 Enterococcus faecalis 62 chromosome, complete genome.
taxonomy:"936153", bioproject:"PRJNA159663", refseq:"NC_017312.1"
NC_017312.1:1338800-1338814
GAATCCGAAAGCGGAATTGATTTTCAACAA1338800AATGTTGTCAATGAAAATAATGCGTTAAAAGTTACAACAATTATC
rs:NC_017568 Staphylococcus pseudintermedius ED99 chromosome, complete genome.
taxonomy:"984892", bioproject:"PRJNA162109", refseq:"NC_017568.1"
NC_017568.1:139012-139026
CCTTTACGCGCAGTTACAACAGCAACGATT139012AATGTTGTCAATGAACTTAAAATGGAGACGAACTCAGGACCAGTA
rs:NZ_CM001581 Pasteurella multocida subsp. gallicida P1059 chromosome, whole genome shotgun sequence.
taxonomy:"1169409", bioproject:"PRJNA181870", refseq:"NZ_CM001581.1"
NZ_CM001581.1:2114554-2114568
TATTTGGGCGTGTCAGTAGATAATGTCGAA2114554AATGTTGTCAATGAATTGGTGACAGGTGCGACAAGATTAAAATTG
rs:NZ_CM001580 Pasteurella multocida subsp. gallicida X73 chromosome, whole genome shotgun sequence.
taxonomy:"1169410", bioproject:"PRJNA181869", refseq:"NZ_CM001580.1"
NZ_CM001580.1:2041884-2041898
TATTTGGGTGTGTCAGTAGATAATGTCGAA2041884AATGTTGTCAATGAATTGGTGACAGGTGCGACAAGATTAAAATTG
rs:NC_019770 Enterococcus faecalis str. Symbioflor 1, complete genome.
taxonomy:"1261557", bioproject:"PRJNA183342", refseq:"NC_019770.1"
NC_019770.1:826238-826252
AGGAATCGCCGAGCGATTGGCAAAACGTGG826238AATGTTGTCAATGAATCAACCAAAGAAACGACTAATTTAACTACC
rs:NC_019427 Anabaena sp. 90 chromosome chANA01, complete sequence.
taxonomy:"46234", bioproject:"PRJNA179383", refseq:"NC_019427.1"
NC_019427.1:260790-260804
GTCTTGAGATTCCCAATTTTTAATAATATA260790TTCATTGACAACATTATCTAACCAAAACTCTTCATAACCTTTAGC
rs:NC_003030 Clostridium acetobutylicum ATCC 824 chromosome, complete genome.
taxonomy:"272562", bioproject:"PRJNA57677", refseq:"NC_003030.1"
NC_003030.1:2175576-2175590
GGTATTTTATCTTTATTTACAAAAACAGTC2175576TTCATTGACAACATTATTCTCGAAAGTTCTCCTCCTGATACAATT
rs:NC_009085 Acinetobacter baumannii ATCC 17978 chromosome, complete genome.
taxonomy:"400667", bioproject:"PRJNA58731", refseq:"NC_009085.1"
NC_009085.1:1847708-1847722
ATGTTAAGCGATGCACCAGCATTGCAGTCA1847708TTCATTGACAACATTTTGCGCCATGGTCTTGACATCAAGCTTGAA
rs:NC_011026 Chloroherpeton thalassium ATCC 35110 chromosome, complete genome.
taxonomy:"517418", bioproject:"PRJNA59187", refseq:"NC_011026.1"
NC_011026.1:1592376-1592390
CCTCATGAAGCGGGCAGCGGGATTGAGCAG1592376TTCATTGACAACATTCGCAAGCTCAATTTGCACAATTCCATTTTC
rs:NZ_CM000720 Bacillus cereus R309803 chromosome, whole genome shotgun sequence.
taxonomy:"526968", bioproject:"PRJNA55153", refseq:"NZ_CM000720.1"
NZ_CM000720.1:1473351-1473365
ATCGGAACGGTTCCAGCTAACAATACGGTG1473351TTCATTGACAACATTCCAGAAGGGACAATATTCATTGAAGATAGC
rs:NZ_CM000718 Bacillus cereus MM3 chromosome, whole genome shotgun sequence.
taxonomy:"526971", bioproject:"PRJNA55159", refseq:"NZ_CM000718.1"
NZ_CM000718.1:1476543-1476557
ATCGGAACTGTTCCAGCTAACAATACGGTG1476543TTCATTGACAACATTCCAGAAGGTACTATATTCATTGAAGATAGC
rs:NZ_CM000724 Bacillus cereus BDRD-ST26 chromosome, whole genome shotgun sequence.
taxonomy:"526975", bioproject:"PRJNA55167", refseq:"NZ_CM000724.1"
NZ_CM000724.1:1462919-1462933
ATCGGAACGGTTCCAGCTAACAATACGGTG1462919TTCATTGACAACATTCCAGAAGGGACAATATTCATTGAAGATAGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/prok/AATGTTGTCAATGAA
lang : en | db : prok | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.72:28224/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.115 | 0.032 | search_minus_done; http://172.18.8.72:28224/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=7
0.120 | 0.005 | cgi_end;

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