GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-19 13:36:09, GGGenome : Megabat genome, Broad/pteVam1 (Jul, 2008)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

scaffold_1156:249059-249073
CATGATAACGATCTGAGTCATGTAGTTGAG249059TTCATTGACAACATTTAAATAATCCATAGCTCGTTTCCACTGTTC
scaffold_3160:6735-6749
AGTATGCTGCACTCCAAATACTTTTGTGTT6735TTCATTGACAACATTTACTATTACATATACATATGAAAAACAGTC
scaffold_5546:30223-30237
TATGTGTCTTCTTGATGTTCATTTAGGTCA30223TTCATTGACAACATTATGGGAAAAAACTAGACCAGATAAACATTC
scaffold_5957:55128-55142
ACTGCATATTTAAAACAAATTTAGTTTCTT55128TTCATTGACAACATTGGAGAAGAAAAAAATATTATTTTAGAATAC
scaffold_6037:40166-40180
CTCACCCAAAGGGTTGGGTAACAGGGAAAT40166TTCATTGACAACATTTGGGCAAAAGTATTTGGGGAGATGCCCTTT
scaffold_15051:3485-3499
GTTAAAAAGAACAAACCGATTCAAGGTTTG3485TTCATTGACAACATTCCAGTGAGAGTCGAAAATGGTATAAGAGCC
scaffold_25484:8465-8479
TCTGTTAAAAACACTGATAGAACTCATATT8465TTCATTGACAACATTACATCATTTCTAAGAAGATTTAATAACCTT
scaffold_2419:35072-35086
TCACAACTGAGACCAGCTTTCAGCAGTGAG35072AATGTTGTCAATGAAATAATGTTGACATAAGTACTATAGGTGAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/en/pteVam1/TTCATTGACAACATT
lang : en | db : pteVam1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.082 | 0.074 | search_plus_done; http://172.18.8.78:28042/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.005 | search_minus_done; http://172.18.8.78:28042/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=43
0.088 | 0.000 | cgi_end;

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