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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 10:49:49, GGGenome : RefSeq complete RNA release 226 (Sep, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X1, mRNA
XM_020973980.1:2946-2960
GATCAGTGGAAACGTGCTATGGATTACCTA2946AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X2, mRNA
XM_020973982.1:2947-2961
GATCAGTGGAAACGTGCTATGGATTACCTA2947AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X3, mRNA
XM_020973983.1:2946-2960
GATCAGTGGAAACGTGCTATGGATTACCTA2946AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X4, mRNA
XM_020973984.1:2946-2960
GATCAGTGGAAACGTGCTATGGATTACCTA2946AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X5, mRNA
XM_020973985.1:2946-2960
GATCAGTGGAAACGTGCTATGGATTACCTA2946AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X6, mRNA
XM_020973986.1:2946-2960
GATCAGTGGAAACGTGCTATGGATTACCTA2946AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X7, mRNA
XM_020973987.1:2945-2959
GATCAGTGGAAACGTGCTATGGATTACCTA2945AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X8, mRNA
XM_020973988.1:2945-2959
GATCAGTGGAAACGTGCTATGGATTACCTA2945AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X9, mRNA
XM_020973989.1:2949-2963
GATCAGTGGAAACGTGCTATGGATTACCTA2949AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X10, mRNA
XM_020973990.1:2944-2958
GATCAGTGGAAACGTGCTATGGATTACCTA2944AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X11, mRNA
XM_020973991.1:2948-2962
GATCAGTGGAAACGTGCTATGGATTACCTA2948AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X12, mRNA
XM_020973993.1:2944-2958
GATCAGTGGAAACGTGCTATGGATTACCTA2944AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X13, mRNA
XM_020973994.1:2947-2961
GATCAGTGGAAACGTGCTATGGATTACCTA2947AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
Entamoeba invadens IP1 hypothetical protein (EIN_371760) mRNA, complete cds
XM_004259487.1:88-102
CTAACTCAACGCGATGTTGGAGAAGAGTAC88AATGTTGTCAATGAAAAGACATCAACTCCTGATGTTCAAGAACTT
Ichthyophthirius multifiliis hypothetical protein (IMG5_180790) mRNA, complete cds
XM_004027535.1:2404-2418
AACTAGTTTGGAGCACCTTTGGTATTAAAA2404AATGTTGTCAATGAATATAGAATCGATGAAAATGAAATTATACTC
PREDICTED: Saccoglossus kowalevskii hamartin-like (LOC100378717), mRNA
XM_002734995.2:1510-1524
GAATTAAAAAAGACCAGTGCTGAGTTGTTT1510AATGTTGTCAATGAACTTGAAGATTTGAAAGAGAAAGCAGCAATG
PREDICTED: Arachis ipaensis uncharacterized LOC107636275 (LOC107636275), ncRNA
XR_002360232.1:1089-1103
ATAACTATTAAATAGTAACTTTTAATTTCT1089AATGTTGTCAATGAATGTTATTGTTGTTGCTATAGAATTTTAATA
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X1, mRNA
XM_021084570.1:3143-3157
GAGCAGTGGAAACGAGCTATGGATTATTTA3143AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X2, mRNA
XM_021084571.1:3153-3167
GAGCAGTGGAAACGAGCTATGGATTATTTA3153AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X3, mRNA
XM_021084572.1:2976-2990
GAGCAGTGGAAACGAGCTATGGATTATTTA2976AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X4, mRNA
XM_021084574.1:3143-3157
GAGCAGTGGAAACGAGCTATGGATTATTTA3143AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X5, mRNA
XM_021084575.1:3140-3154
GAGCAGTGGAAACGAGCTATGGATTATTTA3140AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X6, mRNA
XM_021084576.1:3143-3157
GAGCAGTGGAAACGAGCTATGGATTATTTA3143AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X7, mRNA
XM_021084577.1:3105-3119
GAGCAGTGGAAACGAGCTATGGATTATTTA3105AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X8, mRNA
XM_021084578.1:3143-3157
GAGCAGTGGAAACGAGCTATGGATTATTTA3143AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X9, mRNA
XM_021084579.1:3143-3157
GAGCAGTGGAAACGAGCTATGGATTATTTA3143AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X10, mRNA
XM_021084580.1:3272-3286
GAGCAGTGGAAACGAGCTATGGATTATTTA3272AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X11, mRNA
XM_021084581.1:3143-3157
GAGCAGTGGAAACGAGCTATGGATTATTTA3143AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X12, mRNA
XM_021084582.1:3059-3073
GAGCAGTGGAAACGAGCTATGGATTATTTA3059AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X13, mRNA
XM_021084583.1:3143-3157
GAGCAGTGGAAACGAGCTATGGATTATTTA3143AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X14, mRNA
XM_013987579.2:3143-3157
GAGCAGTGGAAACGAGCTATGGATTATTTA3143AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X15, mRNA
XM_013987581.2:3272-3286
GAGCAGTGGAAACGAGCTATGGATTATTTA3272AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X16, mRNA
XM_021084584.1:3140-3154
GAGCAGTGGAAACGAGCTATGGATTATTTA3140AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X17, misc_RNA
XR_002341839.1:3143-3157
GAGCAGTGGAAACGAGCTATGGATTATTTA3143AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X18, mRNA
XM_021084585.1:3143-3157
GAGCAGTGGAAACGAGCTATGGATTATTTA3143AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Numida meleagris diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X1, mRNA
XM_021380167.1:3109-3123
GAACAGTGGAAACGAGCTATGGATTACTTA3109AATGTTGTCAATGAACTCAATTACATGACACAGATTGTTATCATG
PREDICTED: Numida meleagris diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X2, mRNA
XM_021380168.1:2942-2956
GAACAGTGGAAACGAGCTATGGATTACTTA2942AATGTTGTCAATGAACTCAATTACATGACACAGATTGTTATCATG
PREDICTED: Numida meleagris diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X3, mRNA
XM_021380169.1:2997-3011
GAACAGTGGAAACGAGCTATGGATTACTTA2997AATGTTGTCAATGAACTCAATTACATGACACAGATTGTTATCATG
PREDICTED: Numida meleagris diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X4, mRNA
XM_021380171.1:3087-3101
GAACAGTGGAAACGAGCTATGGATTACTTA3087AATGTTGTCAATGAACTCAATTACATGACACAGATTGTTATCATG
PREDICTED: Numida meleagris diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X5, mRNA
XM_021380172.1:3027-3041
GAACAGTGGAAACGAGCTATGGATTACTTA3027AATGTTGTCAATGAACTCAATTACATGACACAGATTGTTATCATG
PREDICTED: Numida meleagris diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X6, mRNA
XM_021380173.1:3109-3123
GAACAGTGGAAACGAGCTATGGATTACTTA3109AATGTTGTCAATGAACTCAATTACATGACACAGATTGTTATCATG
PREDICTED: Numida meleagris diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X7, mRNA
XM_021380174.1:3109-3123
GAACAGTGGAAACGAGCTATGGATTACTTA3109AATGTTGTCAATGAACTCAATTACATGACACAGATTGTTATCATG
PREDICTED: Numida meleagris diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X8, mRNA
XM_021380175.1:3108-3122
GAACAGTGGAAACGAGCTATGGATTACTTA3108AATGTTGTCAATGAACTCAATTACATGACACAGATTGTTATCATG
PREDICTED: Numida meleagris diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X9, mRNA
XM_021380176.1:3109-3123
GAACAGTGGAAACGAGCTATGGATTACTTA3109AATGTTGTCAATGAACTCAATTACATGACACAGATTGTTATCATG
PREDICTED: Numida meleagris diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X10, mRNA
XM_021380177.1:3109-3123
GAACAGTGGAAACGAGCTATGGATTACTTA3109AATGTTGTCAATGAACTCAATTACATGACACAGATTGTTATCATG
PREDICTED: Numida meleagris diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X11, mRNA
XM_021380178.1:3109-3123
GAACAGTGGAAACGAGCTATGGATTACTTA3109AATGTTGTCAATGAACTCAATTACATGACACAGATTGTTATCATG
PREDICTED: Numida meleagris diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X12, mRNA
XM_021380179.1:3109-3123
GAACAGTGGAAACGAGCTATGGATTACTTA3109AATGTTGTCAATGAACTCAATTACATGACACAGATTGTTATCATG
PREDICTED: Numida meleagris diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X13, mRNA
XM_021380180.1:3109-3123
GAACAGTGGAAACGAGCTATGGATTACTTA3109AATGTTGTCAATGAACTCAATTACATGACACAGATTGTTATCATG
PREDICTED: Numida meleagris diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X14, mRNA
XM_021380182.1:3109-3123
GAACAGTGGAAACGAGCTATGGATTACTTA3109AATGTTGTCAATGAACTCAATTACATGACACAGATTGTTATCATG
PREDICTED: Numida meleagris diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X15, mRNA
XM_021380183.1:3109-3123
GAACAGTGGAAACGAGCTATGGATTACTTA3109AATGTTGTCAATGAACTCAATTACATGACACAGATTGTTATCATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/refseq/AATGTTGTCAATGAA
lang : en | db : refseq | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.093 | 0.084 | search_plus_done; http://172.18.8.135:27496/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.131 | 0.037 | search_minus_done; http://172.18.8.135:27496/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=0
0.131 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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