GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2022-10-02 22:46:53, GGGenome : RefSeq complete RNA release 210 (Jan, 2022)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Agaricus bisporus var. bisporus H97 ATP2 beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase (AGABI2DRAFT_190409), mRNA
XM_006457965.1:1000-1014
CGTGATGAAGAAGGTCAGGATGTGTTGCTC1000TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG
Cordyceps militaris CM01 ATP synthase beta chain (CCM_07426), partial mRNA
XM_006672567.1:871-885
CGTGATGAGGAAGGTCAGGACGTGCTGCTC871TTCATTGACAACATTTTCCGTTTCACTCAGGCTGGTTCTGAGGTG
PREDICTED: Chrysochloris asiatica coronin, actin binding protein, 2B (CORO2B), mRNA
XM_006866553.1:277-291
GGCAACGTGCTGGACATCAAGTGGAACCCC277TTCATTGACAACATTATCGCCTCATGTTCAGAGGACACCTCCGTG
Agaricus bisporus var. burnettii JB137-S8 ATP2 beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase (AGABI1DRAFT_111188), mRNA
XM_007326499.1:1000-1014
CGTGATGAAGAAGGTCAGGATGTGTTGCTC1000TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG
Coniophora puteana RWD-64-598 SS2 ATP synthase F1 beta subunit mRNA
XM_007766058.1:968-982
CGTGACGAGGAGGGCCAGGACGTGCTTCTG968TTCATTGACAACATTTTCCGCTTCACGCAAGCCGGTTCCGAGGTA
Coniophora puteana RWD-64-598 SS2 hypothetical protein partial mRNA
XM_007775178.1:2305-2319
ATGAACGAAGTCAAAGAGTCGGCTCAAAGC2305TTCATTGACAACATTCAGAGGAGAACGGTCTTTGTTTCCCAAAAC
Endocarpon pusillum Z07020 ATP synthase subunit beta mRNA
XM_007802133.1:979-993
CGTGACGAGGAAGGACAGGACGTGCTGCTC979TTCATTGACAACATTTTCCGATTCACCCAGGCTGGTTCTGAGGTG
Metarhizium acridum CQMa 102 ATP synthase beta chain precursor partial mRNA
XM_007816203.1:1081-1095
CGTGACCAGGAAGGCCAGGATGTGCTGCTC1081TTCATTGACAACATTTTCCGATTCACTCAGGCCGGCTCTGAGGTG
Pestalotiopsis fici W106-1 ATP synthase subunit beta mRNA
XM_007837839.1:871-885
CGTGACGCCGAGGGACAGGATGTGCTGCTC871TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG
PREDICTED: Stegastes partitus homeobox protein engrailed-1-like (LOC103355596), transcript variant X1, mRNA
XM_008279450.1:396-410
GCTCAGCAGGCCCACAGAACCACCAACTTT396TTCATTGACAACATTTTGCGACCGGACTTCGGCTGTAAAAAGGAG
PREDICTED: Stegastes partitus homeobox protein engrailed-1-like (LOC103355596), transcript variant X2, mRNA
XM_008279451.1:396-410
GCTCAGCAGGCCCACAGAACCACCAACTTT396TTCATTGACAACATTTTGCGACCGGACTTCGGCTGTAAAAAGGAG
PREDICTED: Equus przewalskii activating signal cointegrator 1 complex subunit 1 (ASCC1), transcript variant X1, mRNA
XM_008539341.1:744-758
TGTGAGATGCTACAGCAGTGTAAAGAGGAA744TTCATTGACAACATTTGTGGGGGCAAACCCCTGGAAGTAGAGATG
PREDICTED: Equus przewalskii activating signal cointegrator 1 complex subunit 1 (ASCC1), transcript variant X2, mRNA
XM_008539342.1:742-756
TGTGAGATGCTACAGCAGTGTAAAGAGGAA742TTCATTGACAACATTTGTGGGGGCAAACCCCTGGAAGTAGAGATG
Cyphellophora europaea CBS 101466 ATP synthase subunit beta, mitochondrial partial mRNA
XM_008715668.1:1486-1500
AGAGACGAAGAAGGTCAAGATGTGTTGCTC1486TTCATTGACAACATTTTCCGCTTCACTCAGGCCGGTTCTGAAGTG
Wallemia ichthyophaga EXF-994 hypothetical protein partial mRNA
XM_009268544.1:907-921
CGTGACGATGAAGGTCAAGATGTCTTGCTC907TTCATTGACAACATTTTCCGTTTCACTCAAGCTGGTTCTGAAGTT
Heterobasidion irregulare TC 32-1 beta subunit of putative F0F1-type ATP synthase mRNA
XM_009544597.1:984-998
CGTGATGAGGAAGGTCAGGATGTGTTGCTC984TTCATTGACAACATTTTCCGCTTCACTCAGGCCGGTTCCGAGGTG
PREDICTED: Cariama cristata ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide (ATP5B), partial mRNA
XM_009697087.1:619-633
AGGGACCAGGAGGGTCAGGACGTGCTGCTC619TTCATTGACAACATTTTCCGCTTCACCCAGGCTGGCTCAGAGGTG
Neurospora tetrasperma FGSC 2508 H+-transporting ATP synthase beta chain mRNA
XM_009854061.1:982-996
CGTGATGAGGAGGGTCAGGATGTGTTGCTC982TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCTGAGGTG
Nicotiana sylvestris ATP synthase subunit beta, mitochondrial-like (LOC104229400), mRNA
NM_001302565.1:993-1007
AGAGATGCTGAGGGGCAGGATGTGCTTCTC993TTCATTGACAACATTTTCAGATTTACCCAGGCTAACTCAGAGGTG
PREDICTED: Populus euphratica ATP synthase subunit beta, mitochondrial-like (LOC105124531), mRNA
XM_011024585.1:1120-1134
CGTGATGCTGAAGGGCAAGATGTGCTTCTC1120TTCATTGACAACATTTTCCGCTTTACCCAGGCTAACTCAGAGGTG
PREDICTED: Populus euphratica uncharacterized LOC105127860 (LOC105127860), mRNA
XM_011029320.1:5024-5038
CTCCCAGTTTGTGAACCATTATCTAGACGA5024TTCATTGACAACATTGAGAAGCCAAAAGTTCAGCAGCTAATCAGT
PREDICTED: Populus euphratica ATP synthase subunit beta, mitochondrial (LOC105135509), mRNA
XM_011040401.1:1087-1101
CGTGATGCTGAAGGGCAAGATGTGCTTCTA1087TTCATTGACAACATTTTCCGCTTTACCCAGGCTAACTCAGAGGTG
PREDICTED: Populus euphratica ATP synthase subunit beta, mitochondrial-like (LOC105119519), mRNA
XM_011017661.1:1124-1138
CGTGATGCTGAAGGGCAAGATGTGCTTCTC1124TTCATTGACAACATTTTCCGCTTTACCCAGGCTAACTCAGAGGTG
Capsaspora owczarzaki ATCC 30864 ATP synthase subunit beta mRNA
XM_004364639.2:980-994
CGTGACGAGGAAGGCCAGGATGTGCTGCTC980TTCATTGACAACATTTTCCGCTTCACCCAGGCCGGTTCCGAGGTG
Metarhizium robertsii ARSEF 23 ATP synthase beta chain mRNA
XM_007823312.1:871-885
CGTGACCAGGAAGGCCAGGATGTGCTACTC871TTCATTGACAACATTTTCCGATTCACTCAGGCCGGTTCTGAGGTG
PREDICTED: Fragaria vesca subsp. vesca chlorophyll a-b binding protein CP29.2, chloroplastic (LOC101309848), mRNA
XM_004302588.2:607-621
GTCGTCTTACTTGGGACAGCCGCTTCCATT607TTCATTGACAACATTGATCTGGATCGAGGTTCTGGTGATCGGCTA
PREDICTED: Gossypium raimondii ATP synthase subunit beta, mitochondrial (LOC105779299), mRNA
XM_012603054.1:1071-1085
CGTGATGCTGAAGGGCAGGATGTGCTTCTC1071TTCATTGACAACATTTTCCGTTTTACTCAAGCAAACTCTGAAGTG
PREDICTED: Gossypium raimondii ATP synthase subunit beta, mitochondrial-like (LOC105779300), mRNA
XM_012603055.1:1066-1080
CGTGATGCAGAAGGGCAGGATGTGCTTCTC1066TTCATTGACAACATTTTCCGTTTTACTCAAGCAAACTCTGAAGTG
Colletotrichum graminicola M1.001 ATP synthase F1 partial mRNA
XM_008098766.1:871-885
CGTGACGAAGAAGGACAGGATGTGTTGCTC871TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG
Acytostelium subglobosum LB1 hypothetical protein partial mRNA
XM_012904189.1:769-783
GTGATGGAGCTACAGTCATCGGATAGAAGG769TTCATTGACAACATTATCAACACAATCAATGATCCACAGCAGCAG
PREDICTED: Dipodomys ordii dynein, axonemal, heavy chain 5 (Dnah5), mRNA
XM_013013842.1:6541-6555
ATCATCAGGGTGAAGTTGGCCAGTTGTGGC6541TTCATTGACAACATTGTTCTAGCCAGGAAGTTTTTCACACTCTAC
Schizosaccharomyces octosporus yFS286 F1-ATPase beta subunit Atp2 mRNA
XM_013160621.1:1022-1036
CGTGACGTTGAAGGTCAAGATGTCTTGTTC1022TTCATTGACAACATTTTCCGTTTCACTCAAGCTGGTTCTGAGGTG
PREDICTED: Papilio polytes ATP synthase subunit beta, mitochondrial (LOC106104691), partial mRNA
XM_013284821.1:682-696
CGTGATCAGGAGGGTCAGGATGTACTGCTC682TTCATTGACAACATTTTCCGTTTCACTCAGGCTGGTTCTGAGGTG
PREDICTED: Papilio xuthus ATP synthase subunit beta, mitochondrial-like (LOC106115960), mRNA
XM_013309627.1:981-995
CGTGACCAGGAGGGTCAGGATGTGCTGCTC981TTCATTGACAACATTTTCCGTTTCACTCAAGCCGGTTCTGAAGTG
PREDICTED: Amyelois transitella ATP synthase subunit beta, mitochondrial (LOC106134642), mRNA
XM_013334736.1:973-987
CGCGACCAAGAAGGACAGGATGTGCTACTT973TTCATTGACAACATTTTCCGTTTCACCCAAGCTGGGTCAGAAGTG
Exophiala aquamarina CBS 119918 ATP synthase subunit beta, mitochondrial partial mRNA
XM_013402041.1:883-897
CGTGACGAAGAAGGACAGGATGTGTTGCTC883TTCATTGACAACATTTTCCGTTTCACTCAAGCCGGTTCCGAAGTA
Aureobasidium subglaciale EXF-2481 hypothetical protein mRNA
XM_013491984.1:1147-1161
CGTGACGAGGAGGGTCAGGATGTGCTTCTC1147TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG
Aureobasidium namibiae CBS 147.97 ATP synthase F1, beta subunit partial mRNA
XM_013575907.1:871-885
CGTGACGAGGAGGGTCAGGATGTGCTTCTC871TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG
PREDICTED: Brassica oleracea var. oleracea ATP synthase subunit beta-1, mitochondrial-like (LOC106327128), mRNA
XM_013765194.1:1026-1040
CGTGATGCCGAGGGCCAAGATGTGTTGCTT1026TTCATTGACAACATTTTCCGTTTCACTCAGGCCAACTCTGAAGTG
PREDICTED: Brassica oleracea var. oleracea ATP synthase subunit beta-1, mitochondrial (LOC106327662), mRNA
XM_013765881.1:1048-1062
CGTGATGCCGAGGGCCAAGATGTGTTGCTT1048TTCATTGACAACATTTTCCGTTTCACTCAGGCCAACTCTGAAGTG
PREDICTED: Brassica oleracea var. oleracea ATP synthase subunit beta-1, mitochondrial-like (LOC106318231), mRNA
XM_013756119.1:1038-1052
CGTGATGCTGAAGGCCAAGATGTGTTGCTT1038TTCATTGACAACATTTTCCGTTTCACTCAGGCTAACTCTGAAGTG
PREDICTED: Brassica oleracea var. oleracea ATP synthase subunit beta-2, mitochondrial-like (LOC106318936), mRNA
XM_013757106.1:1053-1067
CGTGATGCCGAAGGCCAAGATGTGTTGCTT1053TTCATTGACAACATTTTCCGTTTCACTCAGGCTAACTCTGAAGTG
PREDICTED: Apteryx australis mantelli tyrosyl-tRNA synthetase 2, mitochondrial (YARS2), transcript variant X1, mRNA
XM_013947467.1:1232-1246
TTATTTTAACAGTGGGGCTTTTTTTTTTTT1232TTCATTGACAACATTTAAAGTTAATCCAGTGGCTATGAATGTCAG
Trichoderma atroviride IMI 206040 ATP synthase beta chain mitochondrial precursor (atp2), partial mRNA
XM_014090091.1:862-876
CGTGACCAGGAAGGCCAGGATGTCCTGCTC862TTCATTGACAACATTTTCCGATTCACCCAGGCCGGTTCTGAGGTG
PREDICTED: Salmo salar sodium- and chloride-dependent GABA transporter 2-like (LOC106574383), mRNA
XM_014150236.1:304-318
CATCTTCCAGTCGGTGGCCGGCCTGACAGG304TTCATTGACAACATTAAGCACATGATTGGCTACAGCCCGCTGCCC
PREDICTED: Microplitis demolitor DNA translocase FtsK (LOC103571362), mRNA
XM_008549501.1:57-71
AATCCAATTGCACTTGGACAAAGTATCAGT57TTCATTGACAACATTCGTCGATCAACATGAAGATAATCATCGCCT
PREDICTED: Latimeria chalumnae dynein, axonemal, heavy chain 5 (DNAH5), transcript variant X1, mRNA
XM_014492314.1:6641-6655
ATCATTCGTGTGAAGCTCGCTAGCTGTGGT6641TTCATTGACAACATTGTGCTGGCTAGAAAGTTCTTTACTCTTTAC
PREDICTED: Latimeria chalumnae dynein, axonemal, heavy chain 5 (DNAH5), transcript variant X2, mRNA
XM_014492315.1:6688-6702
ATCATTCGTGTGAAGCTCGCTAGCTGTGGT6688TTCATTGACAACATTGTGCTGGCTAGAAAGTTCTTTACTCTTTAC
PREDICTED: Papilio machaon ATP synthase subunit beta, mitochondrial (LOC106717804), mRNA
XM_014511726.1:1002-1016
CGTGACCAGGAGGGTCAGGATGTGCTGCTC1002TTCATTGACAACATTTTCCGTTTCACTCAAGCCGGTTCTGAGGTG
PREDICTED: Papilio machaon ATP synthase subunit beta, mitochondrial-like (LOC106717811), mRNA
XM_014511736.1:982-996
CGTGACCAGGAGGGTCAGGATGTGCTGCTC982TTCATTGACAACATTTTCCGTTTCACTCAAGCCGGTTCTGAGGTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/refseq210/TTCATTGACAACATT
lang : ja | db : refseq210 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.345 | 0.337 | search_plus_done; http://172.18.8.70:28891/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.414 | 0.069 | search_minus_done; http://172.18.8.70:28891/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=0
0.414 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).