GGGenome | Results

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2025-04-25 03:21:48, GGGenome : Rhesus genome, Mmul_10/rheMac10, D3G 25.03 (Mar, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

chr5
position: 146527341-146527355

CAGAATATATTATCGCTTTGAACACAGATT146527341TTCATTGACAACATTTTGTGGGCATCCATTTAATATTAATATTAA

chr5
position: 163209068-163209082

TAAAACCTCTGATTTTGTGTAACACTCCTT163209068TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGACTACAT

chr5
position: 178769009-178769023

TTTGGACCCCCAGATCAGTCTTCATATTCT178769009TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT

chr5
position: 183557954-183557968

GCCTGAGCCACCATGCCCAGCTTGCTATTC183557954TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA

chr16
position: 13890825-13890839

GCCTCTGGGCCTATATTAGATGGGCCATGC13890825TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA

chr17
position: 49200745-49200759

TGTTCAAAGTTTTCCCCTCCAATGTATCTT49200745TTCATTGACAACATTCGGATTTATCACATCAATCAGTCAATAAAT

chr17
position: 66037760-66037774

GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA66037760TTCATTGACAACATTGCCTGAGGTAACTCACACTGAGGTGACAAC

chr19_NW_021160375v1_random
position: 158477-158491

GTGAGCCACCACGCCGGCCTATCTTAGCTT158477TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTGGCAATG

chr2
position: 113358661-113358675

GCCTGTTTTTCATATGCATATGTAATAGGG113358661AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATAGT

chr11
position: 78709330-78709344

GTAAGATAGGTTTGTTCCAGAAGTTTAAAA78709330AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG

chr14
position: 41003831-41003845

GTTTGCTCTATTCACTGTCCTCAACGCTAG41003831AATGTTGTCAATGAACAAGACATATCTATGTTCCTGGAAACTCAA

chr19
position: 40093681-40093695

ACTCCCTTAGGAGAGCTGTAACATTATACT40093681AATGTTGTCAATGAAAAGCTAAGACAGGCCAGGGGTGGTGGCTCA

chr19
position: 40144780-40144794

CTCCCTTAGGAGAGCCGTTAACATTATACT40144780AATGTTGTCAATGAAAAAGCTAAGATAGGCAGGGCGTGGTGGCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.084 | 0.074 | search_plus_done; http://172.18.8.77:28990/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.094 | 0.010 | search_minus_done; http://172.18.8.77:28990/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=42
0.097 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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