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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2021-05-19 08:36:50, GGGenome : Rat genome, RGSC Rnor_6.0/rn6 (Jul, 2014)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

chr2
position: 41926733-41926747
TTTTCAAAATCTTTTGCCTGTATAGACTTT41926733TTCATTGACAACATTAAACTGTATGACATGCAAAAAATAACAGGT
chr2
position: 57234252-57234266
CCTCTCCCATTTACATTTAGTTTTAAGTAA57234252TTCATTGACAACATTTTTTGCATTGTTCAGCCCTTTACCTGTATT
chr2
position: 60329867-60329881
CTGAACTTTCACCATAACAACCCATTAGGT60329867TTCATTGACAACATTCTATGGCAGCTATAGACCCCAACTCCAAAT
chr2
position: 91373041-91373055
TGAATGAAAGGTCAGAGTTCAAGGTGTGAT91373041TTCATTGACAACATTAAATATTTACTGAATCTTAAATCTTATCCT
chr4
position: 160096536-160096550
AAACTGCGCTAAGCAAGACGGTATGGTATT160096536TTCATTGACAACATTAAAGAAAATAGAGAGATAGACACTCGTGTG
chr14
position: 32365434-32365448
GAAGCTAATAGTGCAATCGCCATGGTCTCC32365434TTCATTGACAACATTAACAGCTGTAATAAAATCAAGATATTGGCA
chr18
position: 24697076-24697090
ACATTCCTTACTCCTCTGACAGCAGTTTCT24697076TTCATTGACAACATTCAGGCTATCAGGCCTGATGTTGAGGTCCTT
chr2
position: 239732088-239732102
ATACCAAGTAAAAAAACAAAAAAACAAAAA239732088AATGTTGTCAATGAAGGTGTGGAAGAAAATTTTCCAAACCTAGTG
chr3
position: 31282717-31282731
CTACTTATTCATTCATGTATGTGGGTTTCA31282717AATGTTGTCAATGAACACTGCTGCTTCATCGAACACATGAAAAAT
chr5
position: 97952035-97952049
CATTGTCAACAGTTATACATTTGAAACTTT97952035AATGTTGTCAATGAAATAGATCTGTTCATCAAATAATCTGAAAAA
chr5
position: 98026329-98026343
CATTGTCAACAGTTATACATTTGAAACTTT98026329AATGTTGTCAATGAAATAGATCTGTTCATCAAATAATCTGAAAAA
chr6
position: 69203225-69203239
CCATAGATTAGTCATAGATAGCAGCTACTA69203225AATGTTGTCAATGAAGTTTCTACACAAATGGTAATTAGGCAATTT
chr7
position: 112621412-112621426
TCTCTTATGTATCCATTGTCCAATTTCTAG112621412AATGTTGTCAATGAACTGTGTCTTTGAGGCAGTTTCTTTTTGAGC
chr11
position: 80854350-80854364
TTATTCTCTTTAAAATTCACCACAAGGAAA80854350AATGTTGTCAATGAAAATTTAACAATAAGAAAAGAAGGTAAAAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/rn6_d3g2101/TTCATTGACAACATT
lang : ja | db : rn6_d3g2101 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.007 | 0.007 | search_start;
0.080 | 0.073 | search_plus_done; http://172.18.8.75:28872/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.008 | search_minus_done; http://172.18.8.75:28872/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=43
0.092 | 0.004 | cgi_end;

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