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データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-21 23:11:05, GGGenome : Rat genome, mRatBN7.2/rn7, D3G 23.02 (Feb, 2023)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

chr2
position: 41984772-41984786
TTTTCAAAATCTTTTGCCTGTATAGACTTT41984772TTCATTGACAACATTAAACTGTATGACATGCAAAAAATAACAGGT
chr2
position: 57228929-57228943
CCTCTCCCATTTACATTTAGTTTTAAGTAA57228929TTCATTGACAACATTTTTTGCATTGTTCAGCCCTTTACCTGTATT
chr2
position: 59328893-59328907
CTGAACTTTCACCATAACAACCCATTAGGT59328893TTCATTGACAACATTCTATGGCAGCTATAGACCCCAACTCCAAAT
chr4
position: 160381290-160381304
AAACTGCGCTAAGCAAGACGGTATGGTATT160381290TTCATTGACAACATTAAAGAAAATAGAGAGATAGACACTCGTGTG
chr14
position: 30092986-30093000
GAAGCTAATAGTGCAATCGCCATGGTCTCC30092986TTCATTGACAACATTAACAGCTGTAATAAAATCAAGATATTGGCA
chr18
position: 23542900-23542914
ACATTCCTTACTCCTCTGACAGCAGTTTCT23542900TTCATTGACAACATTCAGGCTATCAGGCCTGATGTTGAGGTCCTT
chr2
position: 4519536-4519550
AGGATAAGATTTAAGATTCAGTAAATATTT4519536AATGTTGTCAATGAAATCACACCTTGAACTCTGACCTTTCATTCA
chr2
position: 222985943-222985957
ATACCAAGTAAAAAAACAAAAAAACAAAAA222985943AATGTTGTCAATGAAGGTGTGGAAGAAAATTTTCCAAACCTAGTG
chr3
position: 31606500-31606514
CTACTTATTCATTCATGTATGTGGGTTTCA31606500AATGTTGTCAATGAACACTGCTGCTTCATCGAACACATGAAAAAT
chr5
position: 94935913-94935927
CATTGTCAACAGTTATACATTTGAAACTTT94935913AATGTTGTCAATGAAATAGATCTGTTCATCAAATAATCTGAAAAA
chr6
position: 65952859-65952873
CCATAGATTAGTCATAGATAGCAGCTACTA65952859AATGTTGTCAATGAAGTTTCTACACAAATGGTAATTAGGCAATTT
chr7
position: 103337592-103337606
TCTCTTATGTATCCATTGTCCAATTTCTAG103337592AATGTTGTCAATGAACTGTGTCTTTGAGGCAGTTTCTTTTTGAGC
chr11
position: 77453753-77453767
TTATTCTCTTTAAAATTACACCAAAAGGAA77453753AATGTTGTCAATGAAAATTTAACAATAAGAAAAGAAGGTTAAAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/rn7_d3g2302/TTCATTGACAACATT
lang : ja | db : rn7_d3g2302 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.78:28950/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.091 | 0.008 | search_minus_done; http://172.18.8.78:28950/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=44
0.096 | 0.005 | cgi_end;

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