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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-04-17 11:40:42, GGGenome : Pig genome, SGSC Sscrofa10.2/susScr3 (Aug, 2011)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

chr2:112682291-112682305
CATGATAACGATCTGAGTCATATAGTTGAG112682291TTCATTGACAACATTTAAATAATCCATAGCTCGTTTCCACTGCTC
chr3:111645292-111645306
TCATGGAAATTATCTTTTCAAGTGATCAGA111645292TTCATTGACAACATTCACTTTGGAAGCCCATACCTCTCCCTTTCC
chr3:111718254-111718268
TCATGGAAATTATCTTTTCAAGTGATCAGA111718254TTCATTGACAACATTCACTTTGGAAGCCCATACCTCTCCCTTTCC
chr3:134971732-134971746
TCTCATTATGTTTTCTTGTACATTCTCAAG134971732TTCATTGACAACATTTGTAATAGCTATTTTAAGGTTCCCATCTAC
chr8:65211461-65211475
ACTTCCTGTCTGGATAGCTCCTTCTCTGGA65211461TTCATTGACAACATTTCCTTTTTTTGTTCACTAACCTTTCCACCA
chr10:1509165-1509179
ATCAGGAGAATTATTGAAGCCATAATGCTT1509165TTCATTGACAACATTTTCTAGATGTTCAGTCTAAAATATATCCTA
chr15:110540171-110540185
GGTCTTACATCTTTAAACTTTCCCTTTCGA110540171TTCATTGACAACATTCAGAAGTCAAAAAATAAACATTGCTTATCA
chr6:131243673-131243687
ATTGTGAGAGCCCAGCAGAACAGAATCTGG131243673AATGTTGTCAATGAAACAGACCTACGTAGTAGTGCTTTACCTAAT
chr7:71906368-71906382
GGATAAGACCAAGCAGTATTACACTTCAAA71906368AATGTTGTCAATGAAACCATTAGCAAGTTTGTTGGAATATTCTTT
chr8:84909693-84909707
TTAATATTAATATTAAATGGATGCCCAGGG84909693AATGTTGTCAATGAAAATCTGTGTTTAAGAGATAATATATTCTAG
chr9:102829075-102829089
TAGGATATATTTTAGACTGAACATCTAGAA102829075AATGTTGTCAATGAAAAGCATTATGGCTTCAATAATTCTCCTGAT
chr11:29443139-29443153
GAAACAGAAACAATGAATAATTGGTTATGA29443139AATGTTGTCAATGAAAAGTACCTGTGATCACAGGCACAGGAAAAA
GL895285-2:61933-61947
GGATAAGACCAAGCAGTATTACACTTCAAA61933AATGTTGTCAATGAAACCATTAGCAAGTTTGTTGGAATATTCTTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/susScr3/TTCATTGACAACATT
lang : ja | db : susScr3 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.080 | 0.072 | search_plus_done; http://172.18.8.77:28050/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.085 | 0.005 | search_minus_done; http://172.18.8.77:28050/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=43
0.086 | 0.001 | cgi_end;

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