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2025-04-08 18:27:18, GGGenome : Zebra finch genome, WashU taeGut324/taeGut2 (Feb, 2013)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

chr1A:31591557-31591571

CTTTCCCAAGACATAAAATTGATTGAAAAA31591557AATGTTGTCAATGAAAATTAGAATATCTTCCAGCCCAAATCAAAA

chr2:100829052-100829066

GAATGTGGGCATATCCACGAAGCATTTCAA100829052AATGTTGTCAATGAAGAGAGAACAGCTCACACTATAAAATGAATT

chr3:95591523-95591537

TAGCAGACTTGTGACCTTTATGTATCTACA95591523AATGTTGTCAATGAAACGGCTCCTGAAGACAATTAAATGACAACA

chr4A_EQ832705_random:37928-37942

TAAAAAAAAATAATTCTTAAGCAAAATTTA37928AATGTTGTCAATGAAAACTGAAGCCAGTGAAATACCTCTCTGTAG

chrZ:11224809-11224823

CATTTGTAAAAGCAAGAACTGCCTGATAGA11224809AATGTTGTCAATGAACTGTAAAGCAAGTCCTTCATCAGCAGTGAG

chr1A:33074283-33074297

TTCTGCAGTGAAGCTTATTCTGTTAAGTGT33074283TTCATTGACAACATTTGAACTAGCTAAAACAACAGCATGACCCCC

chr1A:36483701-36483715

AAACAGAACTGAAGGATTAAACCTTTGTTG36483701TTCATTGACAACATTTGTTTCTGGGTTGTCAGGTGTTCACATTGG

chr2:76030210-76030224

TCATAGGCTATGGCTAATAGGACTCCCTGA76030210TTCATTGACAACATTAATATTCCAGTGTCCTGAAATATAGAAGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.76:28086/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.005 | search_minus_done; http://172.18.8.76:28086/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=45
0.088 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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