GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-25 08:59:27, GGGenome : Tarsier genome, Broad/tarSyr1 (Aug, 2008)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

scaffold_16346:10402-10416
GTACATTTTCTGCTAAAGCCATACCTGGTT10402AATGTTGTCAATGAATATAACCGAAGGTATAGACCAATGTTTGAT
scaffold_23841:3286-3300
ATTTTTTAATTCACTGCCTATGAAGTTTTG3286AATGTTGTCAATGAAACAATATGCATTATAGAGCCTGAATCCCAG
scaffold_78641:12543-12557
ACATCACTGTGTATTCCGTGAATAGGCACA12543AATGTTGTCAATGAAGTTTTTATAATTTTAAAAAGTATAAGTACA
scaffold_505952:924-938
CAAGAGATTCATAGCAGAAACCTTGTGTCA924AATGTTGTCAATGAAGGTTTTTTGAAGGGATGGGTTAACACTACA
scaffold_546974:505-519
ATGCAAGATGGCTTGAATGAATTTGTATCC505AATGTTGTCAATGAAAGGAAGGTGAGGAGGGAAGGAGAACCCTCT
scaffold_5725:12068-12082
TGTGACTAGAGGTTCTCCCTGGAGGCTGTA12068TTCATTGACAACATTGCCTGAGGTAACTCACGCTGAAGGTGACAA
scaffold_8200:3556-3570
TGTACAAGGGCTTGGATATCACAAGGCACA3556TTCATTGACAACATTAATGTAACAATGCAGCACACTATAAAGTTA
scaffold_10217:10527-10541
AAGATTTCCTTCATTGTAAAAAGTACACAT10527TTCATTGACAACATTTTAAAACATGTGTTACCCAGTGTTTACCAA
scaffold_23247:10610-10624
ATGACATAAGCATTGTTGGATTTGTTTAAG10610TTCATTGACAACATTCCCGTCTTTGCCTTTTAAGTTCTGAACCAA
scaffold_43008:7485-7499
CCAGTATACTGCACTCCAAATACTATTGTT7485TTCATTGACAACATTCACTATTACATATGCATATGAAAAACAGGC
scaffold_78535:258-272
TTTGGCCTTTTGACAATTAGTCAATTATTC258TTCATTGACAACATTTTGACCTCATTACCCAGTAGTTATTAAACT
scaffold_119512:3449-3463
TTATCTTAATTAGTGTGAATATTCATAAGT3449TTCATTGACAACATTAATGTGTTTGATTATGTGTTTGATTATGGG
scaffold_120121:4420-4434
CTCCCTATCTTTTATTCCCTAGTCCATTGT4420TTCATTGACAACATTCTTGACTGTCTCCCTCCTTTGTCTATCGTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/tarSyr1/AATGTTGTCAATGAA
lang : en | db : tarSyr1 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.083 | 0.075 | search_plus_done; http://172.18.8.77:28063/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.089 | 0.006 | search_minus_done; http://172.18.8.77:28063/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=45
0.091 | 0.002 | cgi_end;

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