GGGenome | Results

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2025-04-09 12:01:59, GGGenome : Garter snake genome, Thanmnophis_sirtalis-6.0/thaSir1 (Jun, 2015)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

NW_013657768v1:240554-240568

TCTACGGCAAAAGGCAAGAGTACCAAAATT240554TTCATTGACAACATTCAGCAAGTGTTTTGCTCTTGGAAGCCTAAA

NW_013657858v1:1044866-1044880

TGCTTTAAGCCCTTTTCTTATATGAGCCAC1044866TTCATTGACAACATTCCCTGCATTTCAGGAGCAATTTTTAAGTTA

NW_013658931v1:258711-258725

TCATTTCAAGACTCTTACTGTTTTCATTTC258711TTCATTGACAACATTTATGTGTGCAGTAATAATGCAAGGGAGGAG

NW_013659135v1:222210-222224

ATGTTCAGTGCCTCCTGGGTCATCTCTGTA222210TTCATTGACAACATTTCTGCTGGGACTGCTTTGAAAGTGAAGTAG

NW_013657803v1:1056606-1056620

AGTCCATGAACAAAAGGAAATGATTGTTCC1056606AATGTTGTCAATGAACATTCGGGATGATAAAAAATGGATGAAATT

NW_013657833v1:1197548-1197562

CTCTGAAATGGGACGATTAATGCTAAGAAA1197548AATGTTGTCAATGAAATACAGATAGCAGACATTATTATCCCATTC

NW_013660079v1:28558-28572

TATCTCTCTCTCTATCTATCATCTATTTGT28558AATGTTGTCAATGAAAATGGGGGGGGGAGTGGTCTCCACTCACAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.76:28759/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.005 | search_minus_done; http://172.18.8.76:28759/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.088 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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