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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-04-19 10:18:54, GGGenome : Alpaca genome, Vicugna_pacos-2.0.1/vicPac2 (Mar, 2013)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

KB632439:14070665-14070679
TTAAGTGCTATTAAAGCATGTATGTCTTAG14070665TTCATTGACAACATTGTTTTTTCTTCTTCCTAACTGGTATAAAAT
KB632466:6964034-6964048
GACAGTTTGCAGTTCTTAGTTGTTAACTGA6964034TTCATTGACAACATTTGCAGCTTAAGATCTCCAGGTGATTCAGCT
KB632536:4284494-4284508
CTAGAATATATTATCACTTAGACACAGATT4284494TTCATTGACAACATTCTGTGGGCATCCACTTAATATTAAGCCAAG
KB632549:1682154-1682168
ATTGACCCTTTTTTATGTTGTAATAACTCT1682154TTCATTGACAACATTCCTTTCTCTGAAGTCTCTGTCTGAAATTAA
KB632595:2104572-2104586
GAAACAAAGGTTAGAGTTTAAGGAAACTAT2104572TTCATTGACAACATTAAATATTTACAAAATTTCAACTTTATCTCA
KB632601:3970798-3970812
GCCAACTGTGAGGTTTTCTCAGGCTAGTTG3970798TTCATTGACAACATTGGATTCCAAATGTCTCTCTTATGGCCAAAC
KB633254:27202-27216
AAGAAAAGAGTCAAGATTTTACTTACAATA27202TTCATTGACAACATTTCCTTCCATAATAAGACTACATAAAACCAA
ABRR02178701:967-981
CGTGATAAGGAGGGACAAGATGTGCTTCTG967TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCAGAAGTG
KB632435:6904866-6904880
GCCTGTTTTTCATATGCATATGTAATAGTG6904866AATGTTGTCAATGAAAACACAATAGAATTTGGAGTGCAGCATACT
KB632448:760527-760541
ACACCATGTTTTATTCACCACTAAGAAAAA760527AATGTTGTCAATGAAACTAGGATATGCCACTGTTTTTTAAGGCAT
KB632511:2830884-2830898
GAACAGTGGAAACGAGCTATGGATTATTTA2830884AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
KB632675:2251469-2251483
ATCCTGTGTCTGTCAGAGTCATTTCAATGC2251469AATGTTGTCAATGAAACAGAAAGCCTCACCTTTGTGTCCTAAAAG
KB632825:105259-105273
GAAAATCAGGTGAACAGATATTATTATTCT105259AATGTTGTCAATGAAGAAAGCAGGAAGCTAGTAACTGGTGGAGCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/vicPac2/TTCATTGACAACATT
lang : ja | db : vicPac2 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.78:28021/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.006 | search_minus_done; http://172.18.8.78:28021/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=42
0.089 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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