GGGenome Help | Japanese

Database:

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-03-29 04:12:40, GGGenome : Lotus japonicus genome, build 3.0 (Aug, 2015)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lj3.0_chr1 Chr1
position: 1928184-1928198
GAAATTCCATGTTTTACAAGTATTTAATTG1928184AATGTTGTCAATGAACTCATGTTGCATATGTTTGAGTATCATTCT
Lj3.0_chr1 Chr1
position: 7112398-7112412
ATATAGAGCCAAGTTTCTCCTGTAATTAAG7112398AATGTTGTCAATGAATAAATTTTTCAAGGAAACTTCTATTATAAA
Lj3.0_chr2 Chr2
position: 6412591-6412605
TCTAAGGTTATGGTATTCAATTGCCTCTGT6412591AATGTTGTCAATGAAGAGTGTGATGCAAGACAAGACCGCTCCTTT
Lj3.0_chr6 Chr6
position: 21135906-21135920
ATATAGAGCCAAGTTTCTCCTGTAATTAAG21135906AATGTTGTCAATGAATAAATTTTTCAAGGAAACTTCTATTATAAA
Lj3.0_chr0 Chr0
position: 34543462-34543476
CCCGGTTCACGGAAAGAACAGAAGGAAACC34543462AATGTTGTCAATGAAGGTGGATTCTGCTACGTGGGAGGTCATGGC
Lj3.0_chr0 Chr0
position: 188239518-188239532
TCTAAGGTTATGGTATTCAATTGCCTCTGT188239518AATGTTGTCAATGAAGAGTGTGATGCAAGACAAGACCGCTCCTTT
Lj3.0_chr1 Chr1
position: 53194554-53194568
TAACATAAAAGGGTAAAGTATAAATACGTG53194554TTCATTGACAACATTTTCATCCTCTCTTCTAAGCCTGTTTTACTC
Lj3.0_chr2 Chr2
position: 28126950-28126964
AGCTGCTGCACAGAATCATCAAGATGTTGC28126950TTCATTGACAACATTTCAGCTTCTGCTTTCTCCCATCCTTCAAAG
Lj3.0_chr2 Chr2
position: 30850794-30850808
GAAAACTCATTATACTCGCATGAAAAATGT30850794TTCATTGACAACATTCCCACCACCACCTTAAAGAGATCAGAATAT
Lj3.0_chr0 Chr0
position: 61918763-61918777
AGACCATTCTTGGAGAAGTTTGCGGTTGTG61918763TTCATTGACAACATTCTGATTTACTCGAAGAGTAAGGAAGAACAT
Lj3.0_chr0 Chr0
position: 152303994-152304008
AGAATGATACTCAAACATATGCAACATGAG152303994TTCATTGACAACATTCAATTAAATACTTGTAAAACATGGAATTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/lotus_r3.0/AATGTTGTCAATGAA
lang : en | db : lotus_r3.0 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.087 | 0.079 | search_plus_done; http://172.18.8.77:28236/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.095 | 0.008 | search_minus_done; http://172.18.8.77:28236/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=44
0.098 | 0.003 | cgi_end;

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