GGGenome | Results

データベース：

ミスマッチ/ギャップを許容ミスマッチのみ許容：塩基まで (検索する配列長の25%まで)
双方向を検索＋方向のみ検索－方向のみ検索

2024-11-01 08:00:55, GGGenome : Crab-eating macaque pre-spliced RNA, TRaC 20.03 on macFasRKS1912, D3G 20.03 (Mar, 2020)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

ENSMFAG00000042405;TRaC2003L15969|AC005838.1|chr16:63421341:63563178:-|prespliced
position: 27233-27247

GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA

ENSMFAG00000042405;TRaC2003L1596b|COX10|chr16:63421467:63563178:-|prespliced
position: 27233-27247

GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA

ENSMFAG00000042405;TRaC2003L1596c|AC005838.1|chr16:63421738:63563178:-|prespliced
position: 27233-27247

GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA

ENSMFAG00000042405;TRaC2003L1596d|AC005838.1|chr16:63422054:63563178:-|prespliced
position: 27233-27247

GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA

ENSMFAG00000042405;TRaC2003L1596e|AC005838.1|chr16:63422130:63563178:-|prespliced
position: 27233-27247

GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA

ENSMFAG00000042405;TRaC2003L1596f|COX10|chr16:63422142:63563178:-|prespliced
position: 27233-27247

GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA

ENSMFAG00000042405;TRaC2003L15970|AC005838.1|chr16:63422222:63563178:-|prespliced
position: 27233-27247

GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA

ENSMFAG00000042405;TRaC2003L15971|AC005838.1|chr16:63423717:63563178:-|prespliced
position: 27233-27247

GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA

ENSMFAG00000042405;TRaC2003L15972|AC005838.1|chr16:63438762:63563178:-|prespliced
position: 27233-27247

GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA

ENSMFAG00000042405;TRaC2003L15973|AC005838.1|chr16:63438886:63563178:-|prespliced
position: 27233-27247

GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA

ENSMFAG00000042405;TRaC2003L15974|COX10|chr16:63456168:63563178:-|prespliced
position: 27233-27247

GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA

ENSMFAG00000042405;TRaC2003L15975|COX10|chr16:63459106:63563178:-|prespliced
position: 27233-27247

GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA

ENSMFAG00000042405;TRaC2003L15976|COX10|chr16:63467476:63563178:-|prespliced
position: 27233-27247

GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA

ENSMFAG00000042405;TRaC2003L15977|COX10|chr16:63471781:63563178:-|prespliced
position: 27233-27247

GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA

ENSMFAG00000042405;TRaC2003L15979|COX10|chr16:63530037:63563178:-|prespliced
position: 27233-27247

GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA

ENSMFAG00000042150;TRaC2003L1a43e|CYP2A7|chr19:38527395:38627053:-|prespliced
position: 37341-37355

GAGCCACCACGCCCTGCCTATCTTAGCTTT37341TTCATTGACAACATTAGTATAATGTTAACGGCTCTCCTAAGGGAG

ENSMFAG00000042150;TRaC2003L1a43e|CYP2A7|chr19:38527395:38627053:-|prespliced
position: 88246-88260

GAGCCTACCACCCCTGGCCTGTCTTAGCTT88246TTCATTGACAACATTAGTATAATGTTACAGCTCTCCTAAGGGAGT

ENSMFAG00000032459;TRaC2003L1a45e|CYP2A7|chr19:38665885:38775634:+|prespliced
position: 83068-83082

GTGAGCCACCATGCTGGCCTATCTTAGCTT83068TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAA

ENSMFAG00000032459;TRaC2003L1a45f|CYP2A7|chr19:38665885:38775974:+|prespliced
position: 83068-83082

GTGAGCCACCATGCTGGCCTATCTTAGCTT83068TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAA

na;TRaC2003L28bd4|na|chr5:176195809:178390881:+|prespliced
position: 1400030-1400044

TTTGGACCCCCAGATCAGTCTTCATATTCT1400030TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT

na;TRaC2003L28bd6|na|chr5:176195809:177889327:+|prespliced
position: 1400030-1400044

TTTGGACCCCCAGATCAGTCTTCATATTCT1400030TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT

ENSMFAG00000001427;TRaC2003L28bd7|TENM3|chr5:176195817:178948379:+|prespliced
position: 1400022-1400036

TTTGGACCCCCAGATCAGTCTTCATATTCT1400022TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT

ENSMFAG00000001427;TRaC2003L28bd8|TENM3|chr5:176195817:178498271:+|prespliced
position: 1400022-1400036

TTTGGACCCCCAGATCAGTCTTCATATTCT1400022TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT

na;TRaC2003L28bd9|na|chr5:176195817:178186630:+|prespliced
position: 1400022-1400036

TTTGGACCCCCAGATCAGTCTTCATATTCT1400022TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT

na;TRaC2003L28bdb|na|chr5:176195817:178186652:+|prespliced
position: 1400022-1400036

TTTGGACCCCCAGATCAGTCTTCATATTCT1400022TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT

ENSMFAG00000001427;TRaC2003L28bdc|TENM3|chr5:176195817:178948415:+|prespliced
position: 1400022-1400036

TTTGGACCCCCAGATCAGTCTTCATATTCT1400022TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT

ENSMFAG00000001427;TRaC2003L28bdd|TENM3|chr5:176195817:178948466:+|prespliced
position: 1400022-1400036

TTTGGACCCCCAGATCAGTCTTCATATTCT1400022TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT

ENSMFAG00000001427;TRaC2003L28bde|TENM3|chr5:176195817:178950467:+|prespliced
position: 1400022-1400036

TTTGGACCCCCAGATCAGTCTTCATATTCT1400022TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT

ENSMFAG00000041711;TRaC2003L28de8|F11|chr5:182380896:182407878:+|prespliced
position: 12108-12122

GCCTGAGCCACCATGCCCAGCTTGCTATTC12108TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA

ENSMFAG00000003495;TRaC2003L093ed|SYT1|chr11:75751393:76346690:+|prespliced
position: 245949-245963

GTAAGATAGGTTTGTTCCAGAAGTTTAAAA245949AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG

ENSMFAG00000003495;TRaC2003L093ee|SYT1|chr11:75752441:76106019:+|prespliced
position: 244901-244915

GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244901AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG

ENSMFAG00000003495;TRaC2003L093f0|SYT1|chr11:75752441:76346693:+|prespliced
position: 244901-244915

GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244901AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG

ENSMFAG00000003495;TRaC2003L093f1|SYT1|chr11:75752441:76346693:+|prespliced
position: 244901-244915

GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244901AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG

ENSMFAG00000003495;TRaC2003L093f2|SYT1|chr11:75752441:76346776:+|prespliced
position: 244901-244915

GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244901AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG

ENSMFAG00000003495;TRaC2003L093f3|SYT1|chr11:75752441:76346781:+|prespliced
position: 244901-244915

GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244901AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG

ENSMFAG00000003495;TRaC2003L093f4|SYT1|chr11:75752441:76180993:+|prespliced
position: 244901-244915

GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244901AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG

ENSMFAG00000003495;TRaC2003L093f5|SYT1|chr11:75752441:76105811:+|prespliced
position: 244901-244915

GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244901AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG

na;TRaC2003L1a441|na|chr19:38556252:38627040:+|prespliced
position: 33447-33461

CTCCCTTAGGAGAGCCGTTAACATTATACT33447AATGTTGTCAATGAAAAAGCTAAGATAGGCAGGGCGTGGTGGCTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

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Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/macFasRKS1912_Trac2003_prespliced_d3g2003/TTCATTGACAACATT
lang : ja | db : macFasRKS1912_Trac2003_prespliced_d3g2003 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.088 | 0.079 | search_plus_done; http://172.18.8.75:28821/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.115 | 0.027 | search_minus_done; http://172.18.8.75:28821/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=21
0.122 | 0.007 | cgi_end;

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