GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-19 07:36:05, GGGenome : Tibetan frog genome, BGI_ZX_2015/nanPar1 (Mar, 2015)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KN905852v1:1971195-1971209
CTTAAATAAGAATAATATTCTTATTCAGCA1971195TTCATTGACAACATTTACTTTGGTGTATGTAACATGGAAACCAAT
KN905918v1:931394-931408
AACAGGAATCCTCTATACTGAGTGTTCCTG931394TTCATTGACAACATTAGGACATAGTATGTTTACTATAACTACAAT
KN905945v1:769753-769767
AGATATTATTTACATCAAGTCCATCAACCT769753TTCATTGACAACATTTCTTTCCCCTTTTATATTAGTACAGATTGA
KN906140v1:326543-326557
GAAACCAATCTGTCCGATGCAGGAGCCAGC326543TTCATTGACAACATTGAGAAAACCTCAAAAGTCAGACGCCAGGTG
KN906324v1:53516-53530
CACCAATCGCACTATTCAAAACGGTTAGAA53516TTCATTGACAACATTGATGAGATCGGGGAGTTATTTGTTGTTGTC
KN906858v1:281236-281250
ACTCTTTTTCAACTTGACTTCTCATCTGCT281236TTCATTGACAACATTGTGCTACTGTATACTAAACAAAAACCTATT
KN907212v1:445316-445330
AGAGATCAAGAGGGACAAGACGTGCTACTT445316TTCATTGACAACATTTTCAGGTTTACTCAAGCTGGCTCAGAGGTA
KN907768v1:70488-70502
CAAAAGTATTCAACCCCATTGCAAATCAGG70488TTCATTGACAACATTTACAAACTTTTAGTTGTTTGCAATGAACAA
KN908030v1:904-918
AACGTGATCACTGTCAGCTTTTCTAGAGGC904TTCATTGACAACATTTTAGCCTGCAGTTGAACACCTCCACCTGTG
KN909207v1:32376-32390
CTATTAGGTCTATAACTGGAAGAGATGGGG32376TTCATTGACAACATTTATTTTTGTTTTTAAAAAGTGTTAATTTCT
KN905946v1:300066-300080
GCTGGTGCCTAATTTTTGAGGTTTTCTCTA300066AATGTTGTCAATGAAGCTGGCTCCCCCCAAAAAATCCTGCTGGCT
KN905977v1:256372-256386
TTGATCCTTTGAACCTGTCCATACTAATAG256372AATGTTGTCAATGAATCTAAACCATGACTTGACATGTGATTTGAA
KN906183v1:4675-4689
TTTTATCTCCACCAAACAGAAAAAGAATGC4675AATGTTGTCAATGAAGAAAAGCATTGACCTATTGTCAAGATTACA
KN906215v1:999127-999141
TTGTTCCACCTGCCCTCACCATTTTTTTTA999127AATGTTGTCAATGAATGGGGTGATCTATTCACCTTCTATTTAAAA
KN906263v1:1125916-1125930
AGTTGGCGCCCAAATTATGAGGTTTTCTTT1125916AATGTTGTCAATGAAGTTGGCTCATGAAGAAAAAAATTCTGCTGG
KN906790v1:33126-33140
TTGTTCATTGCAAACAACCGAAAGTCTGTA33126AATGTTGTCAATGAACCTGATTTGCAAAGGGGTGGGGGTGGGGTG
KN906968v1:262042-262056
AAGAGATACTCATTAGCACCATATACCTTT262042AATGTTGTCAATGAACATTTTAATTTTCAAATGTCTGTCAGAGTA
KN906980v1:284952-284966
GGTGCCTAACTTTTGAGGGTTTTCTCTATA284952AATGTTGTCAATGAAGCTAGCTACTGAAAAAAATCCTGCTGGCTC
KN909257v1:5912-5926
CCAGGTAACGAAAAGTGAGGGAAAATCCAA5912AATGTTGTCAATGAAACAGGAATAGAGGGATGGTTGTAGTGGGGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/nanPar1/TTCATTGACAACATT
lang : en | db : nanPar1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.081 | 0.073 | search_plus_done; http://172.18.8.76:28774/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.006 | search_minus_done; http://172.18.8.76:28774/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=40
0.089 | 0.002 | cgi_end;

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