GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-21 21:00:53, GGGenome : Gibbon genome, GGSC Nleu3.0/nomLeu3 (Oct, 2012)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr5:111678540-111678554
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA111678540TTCATTGACAACATTGCCTGAGGTAACTCACACTGAGGTGACAAC
chr6:9134900-9134914
CATAGGTTGATAAAGAATCATGCATATATA9134900TTCATTGACAACATTGAATATCCATGAAACCATTGTCCTCACTTG
chr7b:60076820-60076834
TTGCTGTGAAGGATAAGGGATATGATTGGA60076820TTCATTGACAACATTGGAATAGATATGGTAGATTATTATATCAGT
chr7b:72676456-72676470
CAGAATATATTATCACTTTAAACACAGATT72676456TTCATTGACAACATTTTGTGGGCATCCATTTAATATTAATATTAA
chr7b:105514839-105514853
TTTGGACCCCCAAATCAGTCTTCATTTTCT105514839TTCATTGACAACATTCATTAAGTTCTGCAGAAATTAAACAGAATT
chr8:37133981-37133995
ATATTTTAAAATTCATCCATATTTCCACTT37133981TTCATTGACAACATTATTAAGTTTTTTGTGTCTTTTTTCAAATTA
chr17:29892064-29892078
GCAGTGCCTGGCCTGAGTCAGCACATTAGC29892064TTCATTGACAACATTGGTTCGTTCAACAAATATTGCCTGAGAAGA
chr6:8935821-8935835
GAGGGCCTTTCCAGCTCCAAAGTCGATGGC8935821AATGTTGTCAATGAAAGATCAGCAGGTCAGTGCATTATACCCAGG
chr8:78331435-78331449
TTGAGTACGTAGAGGTTCTCAGCCCTTCTC78331435AATGTTGTCAATGAAGTAGATTGAGCTTTAATTGTATATTTAGGT
chr17:17801221-17801235
AAGTTCCAAAGTAAATTTGCATTATATGCT17801221AATGTTGTCAATGAATAGAATATAAATGTGCTTCTTTGCTGCAAT
chr19:67656798-67656812
TTCTGCCCTTTCACAAATAAACATAAAATC67656798AATGTTGTCAATGAAGCATGACTCATCTAATATGGGCCCAGAGGC
chr20:70593813-70593827
TGCTAGGAGTGATAAGGTGTGGCTGATGGC70593813AATGTTGTCAATGAATTATCAGGCTTTCCTCAAACTCCTTTCGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/nomLeu3/TTCATTGACAACATT
lang : en | db : nomLeu3 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.086 | 0.077 | search_plus_done; http://172.18.8.78:28034/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.097 | 0.011 | search_minus_done; http://172.18.8.78:28034/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=43
0.098 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).