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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-11-21 22:53:01, GGGenome : Bushbaby genome, Broad/otoGar3 (Mar, 2011)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

GL873520:7740260-7740274
AATTCTACTCATTTTACAAGCTCATGTTAC7740260TTCATTGACAACATTTTTTTCTTTTCTTCCCTTGTGAGATAATTC
GL873528:25655086-25655100
CATTTATCTCCAAGAGAGCCAACTATTTCC25655086TTCATTGACAACATTCCTAGCAGGCTCTTCATTGTAACTCCTTAA
GL873529:31688423-31688437
GCCCAAGACTGAACACTGCAAAGATTGACT31688423TTCATTGACAACATTCTGTAATAACACACAAGTTCTTAACATAGT
GL873536:29829836-29829850
CAAAGAAAGGTCAGAGTTTGAGGAAACTGT29829836TTCATTGACAACATTAAATATTTACTGATTCTCAACTTTATCCTG
GL873544:18612186-18612200
TTTGTGTGTAACTCGTTCCTAATTTGCTAA18612186TTCATTGACAACATTATGACCTACTTGGTCTTCCAAATTAGAAAA
GL873547:5671173-5671187
CAAAAATCTTTAACTTTCCCTCTTAAACAG5671173TTCATTGACAACATTCTAATCATTTTCTTCCCTCTTAATTTTATT
GL873553:6108472-6108486
ATGCCCGTATGTAAGATCAGTGGCTTTGTT6108472TTCATTGACAACATTCAAGGTAGGCGCTACTAACCTACTACACAC
GL873617:7484642-7484656
ATTGAAGCAAAGTAGTGCAATTATAATCTC7484642TTCATTGACAACATTAGCATATAATGCAAATTTACTTCACAAGTT
GL873619:6746693-6746707
GTTTCCCCCCATCTACAGGCTTCATATTAG6746693TTCATTGACAACATTGGATATTTGCTTTTCCATTTTTGTGATACT
GL873636:4834998-4835012
AACTGCATGTTTAAAATTTTAATATGACTA4834998TTCATTGACAACATTGGTGTGGACTAAAACTCTTTTAATTCTTAG
GL873696:821185-821199
ACAAACATCTGATTTTGTACAATACTCTCA821185TTCATTGACAACATTAAATAGCAATTAAACATTGGCTAAGTATCT
GL873925:9237-9251
TTATATTCTGGTTTGAACTGGTTCATTTTC9237TTCATTGACAACATTTTGAAAAGATGATCACTCAAATTATTTTGT
GL873521:15742609-15742623
TACAAAAAGCAGATGTGTAGTATTTAAAAT15742609AATGTTGTCAATGAACAGGGCGGTGCCTGTGGCTCAGTGGGTAGG
GL873525:4314901-4314915
AAAATAAACAGACTACATGTAGATACATGC4314901AATGTTGTCAATGAATCTCTTGAACATAATTTAGCAAAAGACGCC
GL873537:11294286-11294300
TTTCTTGACAGCCAAATGTGTTTACAAAAG11294286AATGTTGTCAATGAAGATTTATAGATATGGATCTTTTCTTTTTTA
GL873686:2385304-2385318
ACCCCTGGGTGGTTCTTTTCAGTTTGTGCC2385304AATGTTGTCAATGAAAATCTCATCTCAAAACATAAGAACCTGTGT
GL873989:12141-12155
CAGGATAAAGTTGAGAATCAGTAAATATTT12141AATGTTGTCAATGAAACAGTTTCCTCAAACTCTGACCTTTCTTTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/otoGar3/TTCATTGACAACATT
lang : ja | db : otoGar3 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.010 | 0.010 | search_start;
0.091 | 0.081 | search_plus_done; http://172.18.8.78:28024/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.098 | 0.008 | search_minus_done; http://172.18.8.78:28024/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=38
0.100 | 0.001 | cgi_end;

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