GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 00:52:04, GGGenome : Sheep genome, ISGC Oar_v3.1/oviAri3 (Aug, 2012)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr2:195011130-195011144
TTTGTAATACATTTATCAAATAAAGGAGAA195011130TTCATTGACAACATTTACCCAAGTGAATTACAGGGTCAAAAATTC
chr3:185297539-185297553
AGAGAATTCCAGAAAACCATCTACTTCTGC185297539TTCATTGACAACATTAAAACTTTTAGCTGTGTGGATCACAAGAAA
chr4:7476833-7476847
TAAATGATCTGCCTTTTTTAAAGTAATCAT7476833TTCATTGACAACATTTCGAACACTTTGTAGCAAAAGAAAATAAAG
chr4:74476774-74476788
ACTCCCCTAAATATAAGTCCCATTTCTCCT74476774TTCATTGACAACATTTCAAACAGTATGTGTCTTCTGTTTAAATTT
chr6:95241156-95241170
GAATAATTAGAGATCTGAGATAACCTCTAG95241156TTCATTGACAACATTACTGTGGTTATGACAGTATTATTCTTTATA
chr8:931224-931238
CCAGAGCTTCTGCTTCTGTCCTGAATTAGG931224TTCATTGACAACATTCCCTTCACCACCCTACTCTTTCTTATACTT
chr13:81231985-81231999
AGAAGTGTAATTACTGGGTCAGAGTATGGA81231985TTCATTGACAACATTTGGGCTTGTTACAAATTCAGATTATTGAGT
chr23:24070619-24070633
TAGAAGTTCTTAATGTTTGTTTTCTTGGCT24070619TTCATTGACAACATTCCTTTTTGTTGTTGTGTGATCTCATCCGCT
chr4:21387617-21387631
TTAAAGAATATCCGTTCACTGAGGAATCCT21387617AATGTTGTCAATGAAGAGTGAGTCAGATGTATGCCTGTGTCATTT
chr5:99437940-99437954
GAACAGTGGAAACGAGCTATGGATTATTTA99437940AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
chr9:55686573-55686587
TGTTTATATCTAACAAATTGGAAAACTTCA55686573AATGTTGTCAATGAAATCTCTTAGAAACCAATGCAAATATACTTG
chr18:4243466-4243480
AATGTCTAGTTAAATGATGCTTTGGTTTTT4243466AATGTTGTCAATGAAGCATCTTAAATCTCATTACTCTGCTCACAG
chr20:11470016-11470030
CAGTGCATGGCACACAGTAGGTGTGCAGTA11470016AATGTTGTCAATGAATTGATGGAAGGATGGATGGATGAATTCTGG
chrX:76780003-76780017
CCGTCAGCAGTAAGAGTTGCTGGTCTTTTA76780003AATGTTGTCAATGAATCTGCACATCTGGTCTATATGTGAAAAGAA
chrX:87671760-87671774
GTTTACTCTTAAAACTTGAATAAAAGGATC87671760AATGTTGTCAATGAAACTGTAACCATTGATTTATTCAACCCATAT
chrX:124062257-124062271
TTTCTTGTGATCCACACAGCTAAAAGTTTT124062257AATGTTGTCAATGAAGCAGAAGTAGATGGTTTTCTGGAATTCTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/oviAri3/TTCATTGACAACATT
lang : en | db : oviAri3 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.082 | 0.074 | search_plus_done; http://172.18.8.77:28058/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.005 | search_minus_done; http://172.18.8.77:28058/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=42
0.090 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).