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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-11-23 22:27:04, GGGenome : Sheep genome, ISGC Oar_v4.0/oviAri4 (Nov, 2015)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

chr4:21362544-21362558
TTAAAGAATATCCGTTCACTGAGGAATCCT21362544AATGTTGTCAATGAAGAGTGAGTCAGATGTATGCCTGTGTCATTT
chr5:99372622-99372636
GAACAGTGGAAACGAGCTATGGATTATTTA99372622AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
chr9:55545754-55545768
TGTTTATATCTAACAAATTGGAAAACTTCA55545754AATGTTGTCAATGAAATCTCTTAGAAACCAATGCAAATATACTTG
chr18:4247957-4247971
AATGTCTAGTTAAATGATGCTTTGGTTTTT4247957AATGTTGTCAATGAAGCATCTTAAATCTCATTACTCTGCTCACAG
chr20:11414365-11414379
CAGTGCATGGCACACAGTAGGTGTGCAGTA11414365AATGTTGTCAATGAATTGATGGAAGGATGGATGGATGAATTCTGG
chrX:76708301-76708315
CCGTCAGCAGTAAGAGTTGCTGGTCTTTTA76708301AATGTTGTCAATGAATCTGCACATCTGGTCTATATGTGAAAAGAA
chrX:87569418-87569432
GTTTACTCTTAAAACTTGAATAAAAGGATC87569418AATGTTGTCAATGAAACTGTAACCATTGATTTATTCAACCCATAT
chrX:123838441-123838455
TTTCTTGTGATCCACACAGCTAAAAGTTTT123838441AATGTTGTCAATGAAGCAGAAGTAGATGGTTTTCTGGAATTCTCT
chr2:195029773-195029787
TTTGTAATACATTTATCAAATAAAGGAGAA195029773TTCATTGACAACATTTACCCAAGTGAATTACAGGGTCAAAAATTC
chr3:185076741-185076755
AGAGAATTCCAGAAAACCATCTACTTCTGC185076741TTCATTGACAACATTAAAACTTTTAGCTGTGTGGATCACAAGAAA
chr4:7464907-7464921
TAAATGATCTGCCTTTTTTAAAGTAATCAT7464907TTCATTGACAACATTTCGAACACTTTGTAGCAAAAGAAAATAAAG
chr4:74442465-74442479
ACTCCCCTAAATATAAGTCCCATTTCTCCT74442465TTCATTGACAACATTTCAAACAGTATGTGTCTTCTGTTTAAATTT
chr6:95140383-95140397
GAATAATTAGAGATCTGAGATAACCTCTAG95140383TTCATTGACAACATTACTGTGGTTATGACAGTATTATTCTTTATA
chr8:932574-932588
CCAGAGCTTCTGCTTCTGTCCTGAATTAGG932574TTCATTGACAACATTCCCTTCACCACCCTACTCTTTCTTATACTT
chr13:81100274-81100288
AGAAGTGTAATTACTGGGTCAGAGTATGGA81100274TTCATTGACAACATTTGGGCTTGTTACAAATTCAGATTATTGAGT
chr23:24017559-24017573
TAGAAGTTCTTAATGTTTGTTTTCTTGGCT24017559TTCATTGACAACATTCCTTTTTGTTGTTGTGTGATCTCATCCGCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/oviAri4/AATGTTGTCAATGAA
lang : ja | db : oviAri4 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.77:28772/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.089 | 0.005 | search_minus_done; http://172.18.8.77:28772/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=42
0.091 | 0.002 | cgi_end;

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