GGGenome | Results

Database:
mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-25 22:21:15, GGGenome : Oxytricha trifallax micronuclear genome

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

ctg7180000070355
position: 7526-7540

AAAATATAATAGAATGACATAAATTAAGAA7526AATGTTGTCAATGAAATAGTTAAATTCAAAAGGTTTTACAAAGAA

ctg7180000070937
position: 54579-54593

GCTGCTAAATTTGTCAAGTGGACATTTGAC54579AATGTTGTCAATGAAGTAGAGGACATCATTGAGGTAGAAAAGCAA

ctg7180000074354
position: 10257-10271

AAATGTTGGCGATGCATCGCCAAAGTTAAA10257AATGTTGTCAATGAAGCTAGAAATTATATAATTAAGTTTAGCATA

ctg7180000087957
position: 107744-107758

TTCTTTGTAAAACCTTTTGAATTTAACTAT107744TTCATTGACAACATTTTCTTAATTTATGTCATTCTATTATATTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.080 | 0.071 | search_plus_done; http://172.18.8.72:28255/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.085 | 0.006 | search_minus_done; http://172.18.8.72:28255/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=47
0.086 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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