GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-24 15:16:33, GGGenome : Oxytricha trifallax micronuclear genome

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

ctg7180000087957
position: 107744-107758
TTCTTTGTAAAACCTTTTGAATTTAACTAT107744TTCATTGACAACATTTTCTTAATTTATGTCATTCTATTATATTTT
ctg7180000070355
position: 7526-7540
AAAATATAATAGAATGACATAAATTAAGAA7526AATGTTGTCAATGAAATAGTTAAATTCAAAAGGTTTTACAAAGAA
ctg7180000070937
position: 54579-54593
GCTGCTAAATTTGTCAAGTGGACATTTGAC54579AATGTTGTCAATGAAGTAGAGGACATCATTGAGGTAGAAAAGCAA
ctg7180000074354
position: 10257-10271
AAATGTTGGCGATGCATCGCCAAAGTTAAA10257AATGTTGTCAATGAAGCTAGAAATTATATAATTAAGTTTAGCATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/oxymic/TTCATTGACAACATT
lang : en | db : oxymic | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.099 | 0.089 | search_plus_done; http://172.18.8.72:28255/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.104 | 0.005 | search_minus_done; http://172.18.8.72:28255/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=49
0.106 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).