GGGenome Help | Japanese

Database:

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2020-08-15 00:05:03, GGGenome : Chimpanzee genome, CSAC 2.1.4/panTro4 (Feb, 2011)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr2B:164658077-164658091
ATTGCAGCAAAGAAGCACATTTATATTCTA164658077TTCATTGACAACATTAGCATATAATGCAAATTTACTTTGGAACTT
chr3:86102993-86103007
TTGATTTTGTATACATTAAATAGTTGAAAC86102993TTCATTGACAACATTAAATTTGTTTTCTAGGCTCTATTGGGGTAA
chr4:151920181-151920195
CAGAATATATTATCGCTTTAAACACAGATT151920181TTCATTGACAACATTTTGTGGGCACCCATTTAATATTAATATTAA
chr4:168869438-168869452
AAAAACCTCTGATTTTGTGTAACACTCCTT168869438TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGATTACAT
chr6_GL390389_random:2161739-2161753
CTATTTCAATCAACCATCTTGTAATCATAC2161739TTCATTGACAACATTTTACTCATACTATAATAAGTTGCTATTTCT
chr7:2217426-2217440
GTGGTGCCTGGCCTGAGTCAGCTCAGTAGC2217426TTCATTGACAACATTGGTTCGTTTAACAAATATTGCCTGAGAAGA
chr7_GL390503_random:3426-3440
TATATTTGTTATAGAATATTATGTTAAATC3426TTCATTGACAACATTAAAGAGTCATACCTTTTATGGGTGTTAGTT
chr8:27929512-27929526
ATATTTTTAAATTCATCAATATTTCCACTT27929512TTCATTGACAACATTATTAAGTTTTATTGTGCCTCTTTTTCCAAA
chr13:84221936-84221950
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA84221936TTCATTGACAACATTGCCTGAGGTAACTCACACTGAGGTGACAAC
chr18:25343930-25343944
ATATTTATATATGTATATATTTCATATTAT25343930TTCATTGACAACATTTACTTGGGAGATTTGTCTCAACAAAAATTA
chr19:46246980-46246994
AAGCCACCACACCCGGCCTATCTTAGCTTT46246980TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAG
chr2B:200882522-200882536
AATGCCCCACATTTCATTAAGGGTGATGAC200882522AATGTTGTCAATGAAGAAGTTGCTTCTCATATAACTATACTGTCA
chr3:58082688-58082702
GCCTGTTTTTCATATGCATATGTAATAGGG58082688AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATAGT
chr4:67751930-67751944
ACTCACTGGATCCAATCAGCATAATGTCAT67751930AATGTTGTCAATGAAAAGAGTTGAACTCTGTAAAATATTTGAAGA
chr5:9848587-9848601
GAGGGCCTTTCCAGCTCCAAAGTCGATGGC9848587AATGTTGTCAATGAAAGATCAGCAGGTCAGTGCATTATACCCAGG
chr7:32669490-32669504
TCTACAGATTTTGGATTTACCAGCCCCCAC32669490AATGTTGTCAATGAATTCCTTAAAATCTCTCTCTCACTGTCTCTC
chr7:79228548-79228562
AACTAACACCCATAAAAGGTATGACTCTTT79228548AATGTTGTCAATGAAGATTTAACATAATATTCTATAACAAATATA
chr12:79114159-79114173
ATAAGATAGGTTTGTTCCAGAAGTTTAAAA79114159AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG
chr19:46070938-46070952
CTCCCTTAGGAGAGCTGTTAACATTATACT46070938AATGTTGTCAATGAAAAAGCTAAGATAGGCCGGGTGTGGTGGCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/panTro4/TTCATTGACAACATT
lang : en | db : panTro4 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.007 | 0.007 | search_start;
0.080 | 0.074 | search_plus_done; http://172.18.8.78:28026/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.006 | search_minus_done; http://172.18.8.78:28026/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=39
0.088 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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