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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-21 23:16:28, GGGenome : Rock hyrax genome, Broad/proCap1 (Jul, 2008)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

scaffold_616:120666-120680
TTAATTGCTTTGCTTCTTTTACAAAGAACT120666TTCATTGACAACATTTTAACTTCAAGTTTTCTAGCACTATAGTTT
scaffold_2520:54387-54401
GCTTCATGGATTTTTTTCATCTCATAATCA54387TTCATTGACAACATTCATCTCATCAATCTTCTCCATATGTGGAAC
scaffold_10758:50246-50260
ATATGTATTTTTTTCTGAACATGTCATGCC50246TTCATTGACAACATTAAATTACACATGCCATATACTAAACTTGTT
scaffold_23384:15529-15543
TTTTTTTAACTCTACTATCCAACTACTCTG15529TTCATTGACAACATTTACCTGGCAGTAACAAATGATGAGGTACAA
scaffold_30752:10888-10902
CATATCAAGTGGTTTTTAAGAGGTCACATT10888TTCATTGACAACATTAGGTTGGCCTTGCAATTCCTGTAACTTCAG
scaffold_31685:16534-16548
GGCTGGATGAGAACAAATTGTTTCTTAAAT16534TTCATTGACAACATTTGAATGGCAGGCGTTCTCTGTCACTAGTGT
scaffold_35890:16358-16372
ACATGCAAAAATCTGTCACTTGTTTTACAC16358TTCATTGACAACATTCTTCAAGAATGGCTGAAGAAGTTCATTGAC
scaffold_47811:10498-10512
GACAATCTTTCTGACATTTTAAGGTTATTG10498TTCATTGACAACATTTATTGCTTAGGCTAAAGAGAAGAAAGAGAC
scaffold_60200:613-627
TTCAGGGTATTGAATATTTCATCCCATTGC613TTCATTGACAACATTATTTCTGCAGAGAAGTCAGAGGAAAGTCTA
scaffold_67835:22-36
GATGAAGCTGGTTTCAACATT22TTCATTGACAACATTTCTTTTAAGGTCCCGGGTTTTGAAAGATTT
scaffold_127552:6327-6341
CCTTCCTTGTAGGGGTATAGATGCCATCTT6327TTCATTGACAACATTGTACTTCAGAATAGGGCTTGAAATGTTCTT
scaffold_50138:5812-5826
TTGTACTAGTCAGTATCTATCCGGAAGTAC5812AATGTTGTCAATGAAATGTTTACAAGACCTCTTAATACAACTATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/proCap1/TTCATTGACAACATT
lang : en | db : proCap1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.77:28057/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.006 | search_minus_done; http://172.18.8.77:28057/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=39
0.088 | 0.000 | cgi_end;

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