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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-20 23:43:09, GGGenome : RefSeq complete RNA release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Polysphondylium pallidum PN500 DOCK family protein (zizD), partial mRNA
XM_020573829.1:6106-6120
AATACCATTGAATTCAGTGGTTTCTTTGGA6106AATGTTGTCAATGAAGAAGGTTCAGGAGGTGCTTTGTATATCGCA
Polysphondylium pallidum PN500 hypothetical protein partial mRNA
XM_020578270.1:3181-3195
ATTGCTGTGAGAGAATTGAATGATATTTAC3181AATGTTGTCAATGAATATCAAATCTCGAATTGGACATTAACAATT
Polysphondylium pallidum PN500 hypothetical protein partial mRNA
XM_020578271.1:2971-2985
ATTGCAGTGAGAGAATTGAATGATATTTAC2971AATGTTGTCAATGAATATCCAATTCAAAATTGGACATTAACAATT
Polysphondylium pallidum PN500 hypothetical protein partial mRNA
XM_020578286.1:3154-3168
ATTGCTGTGAGAGAATTGGATGACATTTAC3154AATGTTGTCAATGAATATCAAATCTCGAATTGGACATTAACAATT
Polysphondylium pallidum PN500 EGF-like domain-containing protein partial mRNA
XM_020578287.1:1597-1611
ATTGCTGTGAGAGAATTGGATGATATTTAC1597AATGTTGTCAATGAATATCAAATCTCGAATTGGACATTAACAATT
Polysphondylium pallidum PN500 hypothetical protein partial mRNA
XM_020578289.1:3247-3261
ATTGCCGTGAGAGAATTGGATGATATTTAC3247AATGTTGTCAATGAATATCAAATCTCGAATTGGACATTAACAATT
Polysphondylium pallidum PN500 hypothetical protein partial mRNA
XM_020578293.1:3199-3213
ATTGCCGTGAGAGAATTGGATGATATTTAC3199AATGTTGTCAATGAATATCAAATCTCGAATTGGACATTAACAGTC
Entamoeba invadens IP1 hypothetical protein (EIN_371760) mRNA, complete cds
XM_004259487.1:88-102
CTAACTCAACGCGATGTTGGAGAAGAGTAC88AATGTTGTCAATGAAAAGACATCAACTCCTGATGTTCAAGAACTT
Ichthyophthirius multifiliis hypothetical protein (IMG5_180790) mRNA, complete cds
XM_004027535.1:2404-2418
AACTAGTTTGGAGCACCTTTGGTATTAAAA2404AATGTTGTCAATGAATATAGAATCGATGAAAATGAAATTATACTC
PREDICTED: Odocoileus virginianus texanus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X1, mRNA
XM_020890593.1:3171-3185
GAACAGTGGAAACGAGCTATGGATTATTTA3171AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
PREDICTED: Odocoileus virginianus texanus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X2, mRNA
XM_020890594.1:3038-3052
GAACAGTGGAAACGAGCTATGGATTATTTA3038AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
PREDICTED: Odocoileus virginianus texanus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X3, mRNA
XM_020890595.1:2915-2929
GAACAGTGGAAACGAGCTATGGATTATTTA2915AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
PREDICTED: Odocoileus virginianus texanus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X4, mRNA
XM_020890596.1:2873-2887
GAACAGTGGAAACGAGCTATGGATTATTTA2873AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
PREDICTED: Odocoileus virginianus texanus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X5, mRNA
XM_020890597.1:3208-3222
GAACAGTGGAAACGAGCTATGGATTATTTA3208AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
PREDICTED: Odocoileus virginianus texanus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X6, mRNA
XM_020890598.1:3168-3182
GAACAGTGGAAACGAGCTATGGATTATTTA3168AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
PREDICTED: Odocoileus virginianus texanus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X7, mRNA
XM_020890599.1:3171-3185
GAACAGTGGAAACGAGCTATGGATTATTTA3171AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
PREDICTED: Odocoileus virginianus texanus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X8, mRNA
XM_020890600.1:3168-3182
GAACAGTGGAAACGAGCTATGGATTATTTA3168AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
PREDICTED: Odocoileus virginianus texanus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X9, mRNA
XM_020890601.1:4571-4585
GAACAGTGGAAACGAGCTATGGATTATTTA4571AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
PREDICTED: Odocoileus virginianus texanus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X10, mRNA
XM_020890602.1:3171-3185
GAACAGTGGAAACGAGCTATGGATTATTTA3171AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
PREDICTED: Odocoileus virginianus texanus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X11, mRNA
XM_020890603.1:3171-3185
GAACAGTGGAAACGAGCTATGGATTATTTA3171AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
PREDICTED: Odocoileus virginianus texanus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X12, mRNA
XM_020890604.1:3171-3185
GAACAGTGGAAACGAGCTATGGATTATTTA3171AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
PREDICTED: Odocoileus virginianus texanus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X13, mRNA
XM_020890605.1:3168-3182
GAACAGTGGAAACGAGCTATGGATTATTTA3168AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
PREDICTED: Odocoileus virginianus texanus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X14, mRNA
XM_020890606.1:3171-3185
GAACAGTGGAAACGAGCTATGGATTATTTA3171AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
PREDICTED: Odocoileus virginianus texanus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X15, mRNA
XM_020890607.1:2793-2807
GAACAGTGGAAACGAGCTATGGATTATTTA2793AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
PREDICTED: Odocoileus virginianus texanus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X16, mRNA
XM_020890608.1:3171-3185
GAACAGTGGAAACGAGCTATGGATTATTTA3171AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
PREDICTED: Odocoileus virginianus texanus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X17, mRNA
XM_020890609.1:3168-3182
GAACAGTGGAAACGAGCTATGGATTATTTA3168AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
PREDICTED: Odocoileus virginianus texanus ATP binding cassette subfamily A member 13 (ABCA13), mRNA
XM_020899897.1:7645-7659
CTTTATTTTCTTTTGCGACAAAGTGTTCGA7645AATGTTGTCAATGAAATGATTACTTTGAAAAAAGCAGATCATTTA
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X1, mRNA
XM_020973980.1:2946-2960
GATCAGTGGAAACGTGCTATGGATTACCTA2946AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X2, mRNA
XM_020973982.1:2947-2961
GATCAGTGGAAACGTGCTATGGATTACCTA2947AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X3, mRNA
XM_020973983.1:2946-2960
GATCAGTGGAAACGTGCTATGGATTACCTA2946AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X4, mRNA
XM_020973984.1:2946-2960
GATCAGTGGAAACGTGCTATGGATTACCTA2946AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X5, mRNA
XM_020973985.1:2946-2960
GATCAGTGGAAACGTGCTATGGATTACCTA2946AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X6, mRNA
XM_020973986.1:2946-2960
GATCAGTGGAAACGTGCTATGGATTACCTA2946AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X7, mRNA
XM_020973987.1:2945-2959
GATCAGTGGAAACGTGCTATGGATTACCTA2945AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X8, mRNA
XM_020973988.1:2945-2959
GATCAGTGGAAACGTGCTATGGATTACCTA2945AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X9, mRNA
XM_020973989.1:2949-2963
GATCAGTGGAAACGTGCTATGGATTACCTA2949AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X10, mRNA
XM_020973990.1:2944-2958
GATCAGTGGAAACGTGCTATGGATTACCTA2944AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X11, mRNA
XM_020973991.1:2948-2962
GATCAGTGGAAACGTGCTATGGATTACCTA2948AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X12, mRNA
XM_020973993.1:2944-2958
GATCAGTGGAAACGTGCTATGGATTACCTA2944AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Phascolarctos cinereus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X13, mRNA
XM_020973994.1:2947-2961
GATCAGTGGAAACGTGCTATGGATTACCTA2947AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
PREDICTED: Arachis ipaensis uncharacterized LOC107636275 (LOC107636275), ncRNA
XR_002360232.1:1089-1103
ATAACTATTAAATAGTAACTTTTAATTTCT1089AATGTTGTCAATGAATGTTATTGTTGTTGCTATAGAATTTTAATA
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X1, mRNA
XM_021084570.1:3143-3157
GAGCAGTGGAAACGAGCTATGGATTATTTA3143AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X2, mRNA
XM_021084571.1:3153-3167
GAGCAGTGGAAACGAGCTATGGATTATTTA3153AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X3, mRNA
XM_021084572.1:2976-2990
GAGCAGTGGAAACGAGCTATGGATTATTTA2976AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X4, mRNA
XM_021084574.1:3143-3157
GAGCAGTGGAAACGAGCTATGGATTATTTA3143AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X5, mRNA
XM_021084575.1:3140-3154
GAGCAGTGGAAACGAGCTATGGATTATTTA3140AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X6, mRNA
XM_021084576.1:3143-3157
GAGCAGTGGAAACGAGCTATGGATTATTTA3143AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X7, mRNA
XM_021084577.1:3105-3119
GAGCAGTGGAAACGAGCTATGGATTATTTA3105AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X8, mRNA
XM_021084578.1:3143-3157
GAGCAGTGGAAACGAGCTATGGATTATTTA3143AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
PREDICTED: Sus scrofa diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X9, mRNA
XM_021084579.1:3143-3157
GAGCAGTGGAAACGAGCTATGGATTATTTA3143AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/refseq/AATGTTGTCAATGAA
lang : en | db : refseq | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.102 | 0.094 | search_plus_done; http://172.18.8.136:27492/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.140 | 0.038 | search_minus_done; http://172.18.8.136:27492/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=0
0.140 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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