GGGenome Help | Japanese

Database:

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2020-12-04 11:42:05, GGGenome : RefSeq complete RNA release 202 (Sep, 2020)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Agaricus bisporus var. bisporus H97 ATP2 beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase (AGABI2DRAFT_190409), mRNA
XM_006457965.1:1000-1014
CGTGATGAAGAAGGTCAGGATGTGTTGCTC1000TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG
Cordyceps militaris CM01 ATP synthase beta chain (CCM_07426), partial mRNA
XM_006672567.1:871-885
CGTGATGAGGAAGGTCAGGACGTGCTGCTC871TTCATTGACAACATTTTCCGTTTCACTCAGGCTGGTTCTGAGGTG
PREDICTED: Chrysochloris asiatica coronin, actin binding protein, 2B (CORO2B), mRNA
XM_006866553.1:277-291
GGCAACGTGCTGGACATCAAGTGGAACCCC277TTCATTGACAACATTATCGCCTCATGTTCAGAGGACACCTCCGTG
Agaricus bisporus var. burnettii JB137-S8 ATP2 beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase (AGABI1DRAFT_111188), mRNA
XM_007326499.1:1000-1014
CGTGATGAAGAAGGTCAGGATGTGTTGCTC1000TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG
Coniophora puteana RWD-64-598 SS2 ATP synthase F1 beta subunit mRNA
XM_007766058.1:968-982
CGTGACGAGGAGGGCCAGGACGTGCTTCTG968TTCATTGACAACATTTTCCGCTTCACGCAAGCCGGTTCCGAGGTA
Coniophora puteana RWD-64-598 SS2 hypothetical protein partial mRNA
XM_007775178.1:2305-2319
ATGAACGAAGTCAAAGAGTCGGCTCAAAGC2305TTCATTGACAACATTCAGAGGAGAACGGTCTTTGTTTCCCAAAAC
Endocarpon pusillum Z07020 ATP synthase subunit beta mRNA
XM_007802133.1:979-993
CGTGACGAGGAAGGACAGGACGTGCTGCTC979TTCATTGACAACATTTTCCGATTCACCCAGGCTGGTTCTGAGGTG
Metarhizium acridum CQMa 102 ATP synthase beta chain precursor partial mRNA
XM_007816203.1:1081-1095
CGTGACCAGGAAGGCCAGGATGTGCTGCTC1081TTCATTGACAACATTTTCCGATTCACTCAGGCCGGCTCTGAGGTG
Pestalotiopsis fici W106-1 ATP synthase subunit beta mRNA
XM_007837839.1:871-885
CGTGACGCCGAGGGACAGGATGTGCTGCTC871TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG
PREDICTED: Stegastes partitus homeobox protein engrailed-1-like (LOC103355596), transcript variant X1, mRNA
XM_008279450.1:396-410
GCTCAGCAGGCCCACAGAACCACCAACTTT396TTCATTGACAACATTTTGCGACCGGACTTCGGCTGTAAAAAGGAG
PREDICTED: Stegastes partitus homeobox protein engrailed-1-like (LOC103355596), transcript variant X2, mRNA
XM_008279451.1:396-410
GCTCAGCAGGCCCACAGAACCACCAACTTT396TTCATTGACAACATTTTGCGACCGGACTTCGGCTGTAAAAAGGAG
PREDICTED: Equus przewalskii activating signal cointegrator 1 complex subunit 1 (ASCC1), transcript variant X1, mRNA
XM_008539341.1:744-758
TGTGAGATGCTACAGCAGTGTAAAGAGGAA744TTCATTGACAACATTTGTGGGGGCAAACCCCTGGAAGTAGAGATG
PREDICTED: Equus przewalskii activating signal cointegrator 1 complex subunit 1 (ASCC1), transcript variant X2, mRNA
XM_008539342.1:742-756
TGTGAGATGCTACAGCAGTGTAAAGAGGAA742TTCATTGACAACATTTGTGGGGGCAAACCCCTGGAAGTAGAGATG
PREDICTED: Ursus maritimus dynein, axonemal, heavy chain 5 (DNAH5), transcript variant X1, mRNA
XM_008689897.1:6457-6471
ATCATAAGGGTGAAGCTGGCTAGTTGTGGC6457TTCATTGACAACATTGTGTTGGCCAGGAAGTTTTTCACACTCTAC
PREDICTED: Ursus maritimus dynein, axonemal, heavy chain 5 (DNAH5), transcript variant X2, mRNA
XM_008689898.1:6451-6465
ATCATAAGGGTGAAGCTGGCTAGTTGTGGC6451TTCATTGACAACATTGTGTTGGCCAGGAAGTTTTTCACACTCTAC
Cyphellophora europaea CBS 101466 ATP synthase subunit beta, mitochondrial partial mRNA
XM_008715668.1:1486-1500
AGAGACGAAGAAGGTCAAGATGTGTTGCTC1486TTCATTGACAACATTTTCCGCTTCACTCAGGCCGGTTCTGAAGTG
Wallemia ichthyophaga EXF-994 hypothetical protein partial mRNA
XM_009268544.1:907-921
CGTGACGATGAAGGTCAAGATGTCTTGCTC907TTCATTGACAACATTTTCCGTTTCACTCAAGCTGGTTCTGAAGTT
Heterobasidion irregulare TC 32-1 beta subunit of putative F0F1-type ATP synthase mRNA
XM_009544597.1:984-998
CGTGATGAGGAAGGTCAGGATGTGTTGCTC984TTCATTGACAACATTTTCCGCTTCACTCAGGCCGGTTCCGAGGTG
PREDICTED: Cariama cristata ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide (ATP5B), partial mRNA
XM_009697087.1:619-633
AGGGACCAGGAGGGTCAGGACGTGCTGCTC619TTCATTGACAACATTTTCCGCTTCACCCAGGCTGGCTCAGAGGTG
Neurospora tetrasperma FGSC 2508 H+-transporting ATP synthase beta chain mRNA
XM_009854061.1:982-996
CGTGATGAGGAGGGTCAGGATGTGTTGCTC982TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCTGAGGTG
Nicotiana sylvestris ATP synthase subunit beta, mitochondrial-like (LOC104229400), mRNA
NM_001302565.1:993-1007
AGAGATGCTGAGGGGCAGGATGTGCTTCTC993TTCATTGACAACATTTTCAGATTTACCCAGGCTAACTCAGAGGTG
PREDICTED: Populus euphratica ATP synthase subunit beta, mitochondrial-like (LOC105124531), mRNA
XM_011024585.1:1120-1134
CGTGATGCTGAAGGGCAAGATGTGCTTCTC1120TTCATTGACAACATTTTCCGCTTTACCCAGGCTAACTCAGAGGTG
PREDICTED: Populus euphratica uncharacterized LOC105127860 (LOC105127860), mRNA
XM_011029320.1:5024-5038
CTCCCAGTTTGTGAACCATTATCTAGACGA5024TTCATTGACAACATTGAGAAGCCAAAAGTTCAGCAGCTAATCAGT
PREDICTED: Populus euphratica ATP synthase subunit beta, mitochondrial (LOC105135509), mRNA
XM_011040401.1:1087-1101
CGTGATGCTGAAGGGCAAGATGTGCTTCTA1087TTCATTGACAACATTTTCCGCTTTACCCAGGCTAACTCAGAGGTG
PREDICTED: Populus euphratica ATP synthase subunit beta, mitochondrial-like (LOC105119519), mRNA
XM_011017661.1:1124-1138
CGTGATGCTGAAGGGCAAGATGTGCTTCTC1124TTCATTGACAACATTTTCCGCTTTACCCAGGCTAACTCAGAGGTG
Capsaspora owczarzaki ATCC 30864 ATP synthase subunit beta mRNA
XM_004364639.2:980-994
CGTGACGAGGAAGGCCAGGATGTGCTGCTC980TTCATTGACAACATTTTCCGCTTCACCCAGGCCGGTTCCGAGGTG
Metarhizium robertsii ARSEF 23 ATP synthase beta chain mRNA
XM_007823312.1:871-885
CGTGACCAGGAAGGCCAGGATGTGCTACTC871TTCATTGACAACATTTTCCGATTCACTCAGGCCGGTTCTGAGGTG
PREDICTED: Fragaria vesca subsp. vesca chlorophyll a-b binding protein CP29.2, chloroplastic (LOC101309848), mRNA
XM_004302588.2:607-621
GTCGTCTTACTTGGGACAGCCGCTTCCATT607TTCATTGACAACATTGATCTGGATCGAGGTTCTGGTGATCGGCTA
PREDICTED: Gossypium raimondii ATP synthase subunit beta, mitochondrial (LOC105779299), mRNA
XM_012603054.1:1071-1085
CGTGATGCTGAAGGGCAGGATGTGCTTCTC1071TTCATTGACAACATTTTCCGTTTTACTCAAGCAAACTCTGAAGTG
PREDICTED: Gossypium raimondii ATP synthase subunit beta, mitochondrial-like (LOC105779300), mRNA
XM_012603055.1:1066-1080
CGTGATGCAGAAGGGCAGGATGTGCTTCTC1066TTCATTGACAACATTTTCCGTTTTACTCAAGCAAACTCTGAAGTG
Colletotrichum graminicola M1.001 ATP synthase F1 partial mRNA
XM_008098766.1:871-885
CGTGACGAAGAAGGACAGGATGTGTTGCTC871TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG
Acytostelium subglobosum LB1 hypothetical protein partial mRNA
XM_012904189.1:769-783
GTGATGGAGCTACAGTCATCGGATAGAAGG769TTCATTGACAACATTATCAACACAATCAATGATCCACAGCAGCAG
PREDICTED: Dipodomys ordii dynein, axonemal, heavy chain 5 (Dnah5), mRNA
XM_013013842.1:6541-6555
ATCATCAGGGTGAAGTTGGCCAGTTGTGGC6541TTCATTGACAACATTGTTCTAGCCAGGAAGTTTTTCACACTCTAC
Schizosaccharomyces octosporus yFS286 F1-ATPase beta subunit Atp2 mRNA
XM_013160621.1:1022-1036
CGTGACGTTGAAGGTCAAGATGTCTTGTTC1022TTCATTGACAACATTTTCCGTTTCACTCAAGCTGGTTCTGAGGTG
PREDICTED: Papilio polytes ATP synthase subunit beta, mitochondrial (LOC106104691), partial mRNA
XM_013284821.1:682-696
CGTGATCAGGAGGGTCAGGATGTACTGCTC682TTCATTGACAACATTTTCCGTTTCACTCAGGCTGGTTCTGAGGTG
PREDICTED: Papilio xuthus ATP synthase subunit beta, mitochondrial-like (LOC106115960), mRNA
XM_013309627.1:981-995
CGTGACCAGGAGGGTCAGGATGTGCTGCTC981TTCATTGACAACATTTTCCGTTTCACTCAAGCCGGTTCTGAAGTG
PREDICTED: Amyelois transitella ATP synthase subunit beta, mitochondrial (LOC106134642), mRNA
XM_013334736.1:973-987
CGCGACCAAGAAGGACAGGATGTGCTACTT973TTCATTGACAACATTTTCCGTTTCACCCAAGCTGGGTCAGAAGTG
Exophiala aquamarina CBS 119918 ATP synthase subunit beta, mitochondrial partial mRNA
XM_013402041.1:883-897
CGTGACGAAGAAGGACAGGATGTGTTGCTC883TTCATTGACAACATTTTCCGTTTCACTCAAGCCGGTTCCGAAGTA
Aureobasidium subglaciale EXF-2481 hypothetical protein mRNA
XM_013491984.1:1147-1161
CGTGACGAGGAGGGTCAGGATGTGCTTCTC1147TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG
Aureobasidium namibiae CBS 147.97 ATP synthase F1, beta subunit partial mRNA
XM_013575907.1:871-885
CGTGACGAGGAGGGTCAGGATGTGCTTCTC871TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG
PREDICTED: Brassica oleracea var. oleracea ATP synthase subunit beta-1, mitochondrial-like (LOC106327128), mRNA
XM_013765194.1:1026-1040
CGTGATGCCGAGGGCCAAGATGTGTTGCTT1026TTCATTGACAACATTTTCCGTTTCACTCAGGCCAACTCTGAAGTG
PREDICTED: Brassica oleracea var. oleracea ATP synthase subunit beta-1, mitochondrial (LOC106327662), mRNA
XM_013765881.1:1048-1062
CGTGATGCCGAGGGCCAAGATGTGTTGCTT1048TTCATTGACAACATTTTCCGTTTCACTCAGGCCAACTCTGAAGTG
PREDICTED: Brassica oleracea var. oleracea ATP synthase subunit beta-1, mitochondrial-like (LOC106318231), mRNA
XM_013756119.1:1038-1052
CGTGATGCTGAAGGCCAAGATGTGTTGCTT1038TTCATTGACAACATTTTCCGTTTCACTCAGGCTAACTCTGAAGTG
PREDICTED: Brassica oleracea var. oleracea ATP synthase subunit beta-2, mitochondrial-like (LOC106318936), mRNA
XM_013757106.1:1053-1067
CGTGATGCCGAAGGCCAAGATGTGTTGCTT1053TTCATTGACAACATTTTCCGTTTCACTCAGGCTAACTCTGAAGTG
PREDICTED: Apteryx australis mantelli tyrosyl-tRNA synthetase 2, mitochondrial (YARS2), transcript variant X1, mRNA
XM_013947467.1:1232-1246
TTATTTTAACAGTGGGGCTTTTTTTTTTTT1232TTCATTGACAACATTTAAAGTTAATCCAGTGGCTATGAATGTCAG
Trichoderma atroviride IMI 206040 ATP synthase beta chain mitochondrial precursor (atp2), partial mRNA
XM_014090091.1:862-876
CGTGACCAGGAAGGCCAGGATGTCCTGCTC862TTCATTGACAACATTTTCCGATTCACCCAGGCCGGTTCTGAGGTG
PREDICTED: Salmo salar sodium- and chloride-dependent GABA transporter 2-like (LOC106574383), mRNA
XM_014150236.1:304-318
CATCTTCCAGTCGGTGGCCGGCCTGACAGG304TTCATTGACAACATTAAGCACATGATTGGCTACAGCCCGCTGCCC
PREDICTED: Bactrocera oleae ATP synthase subunit beta, mitochondrial (LOC106620747), transcript variant X1, mRNA
XM_014239359.1:921-935
CGTGATCAGGAAGGACAAGATGTGCTGCTT921TTCATTGACAACATTTTCCGCTTCACCCAAGCTGGTTCAGAAGTG
PREDICTED: Bactrocera oleae ATP synthase subunit beta, mitochondrial (LOC106620747), transcript variant X2, mRNA
XM_014239360.1:921-935
CGTGATCAGGAAGGACAAGATGTGCTGCTT921TTCATTGACAACATTTTCCGCTTCACCCAAGCTGGTTCAGAAGTG
PREDICTED: Bactrocera oleae ATP synthase subunit beta, mitochondrial-like (LOC106620749), transcript variant X1, mRNA
XM_014239361.1:983-997
CGTGATCAGGAAGGACAAGATGTGCTGCTT983TTCATTGACAACATTTTCCGCTTCACCCAAGCTGGTTCAGAAGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/refseq/TTCATTGACAACATT
lang : en | db : refseq | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.007 | 0.007 | search_start;
0.215 | 0.208 | search_plus_done; http://172.18.8.74:27492/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.256 | 0.040 | search_minus_done; http://172.18.8.74:27492/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=0
0.256 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).