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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2026-03-04 03:46:21, GGGenome : RefSeq complete RNA release 233 (Jan, 2026)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Agaricus bisporus var. bisporus H97 ATP2 beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase (AGABI2DRAFT_190409), mRNA
XM_006457965.1:1000-1014
CGTGATGAAGAAGGTCAGGATGTGTTGCTC1000TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG
PREDICTED: Anoplophora glabripennis hexosaminidase D (LOC108915844), mRNA
XM_018721988.2:993-1007
ATAAGTTTGGAGGATCTGAAAAAAGAACAT993TTCATTGACAACATTGAACCGGTGGTATGGAGATATACTAAAGAT
PREDICTED: Cucurbita pepo subsp. pepo ATP synthase subunit beta, mitochondrial (LOC111784550), mRNA
XM_023665209.1:1037-1051
CGTGATGCTGAAGGACAGGATGTGCTTCTC1037TTCATTGACAACATTTTCCGCTTTACCCAGGCTAACTCAGAGGTG
PREDICTED: Cucurbita pepo subsp. pepo ATP synthase subunit beta, mitochondrial (LOC111801357), mRNA
XM_023685327.1:1102-1116
CGTGATGCTGAAGGGCAAGACGTGCTTCTC1102TTCATTGACAACATTTTCCGTTTTACCCAGGCTAACTCAGAGGTG
PREDICTED: Myotis lucifugus dynein axonemal heavy chain 5 (DNAH5), mRNA
XM_023752286.1:6364-6378
ATCATAAGGGTGAAGTTGGCTAGCTGTGGC6364TTCATTGACAACATTGTTTTGGCCAGGAAGTTTTTCACGCTCTAC
Ramularia collo-cygni probable H+-transporting ATP synthase beta chain (RCC_05877), partial mRNA
XM_023771141.1:862-876
AGAGACGAAGAGGGCCAGGACGTGCTCCTT862TTCATTGACAACATTTTCCGATTCACCCAGGCCGGATCCGAGGTG
PREDICTED: Capsella rubella ATP synthase subunit beta-1, mitochondrial (LOC17884090), mRNA
XM_023779956.1:1039-1053
CGTGATGCGGAAGGCCAAGATGTCTTGCTT1039TTCATTGACAACATTTTCCGATTTACTCAGGCCAACTCTGAAGTG
PREDICTED: Capsella rubella ATP synthase subunit beta-3, mitochondrial (LOC17881263), mRNA
XM_006287335.2:1079-1093
CGTGATGCCGAAGGCCAAGATGTCTTGCTT1079TTCATTGACAACATTTTCCGTTTCACTCAGGCTAACTCTGAAGTG
PREDICTED: Capsella rubella ATP synthase subunit beta-1, mitochondrial (LOC17879550), mRNA
XM_006282891.2:1018-1032
CGTGATGCTGAAGGCCAAGATGTCTTGCTT1018TTCATTGACAACATTTTCCGTTTCACTCAGGCCAACTCTGAAGTG
Fusarium fujikuroi IMI 58289 probable H+-transporting ATP synthase beta chain (FFUJ_09776), partial mRNA
XM_023568284.1:862-876
AGAGACGAGGAGGGTCAGGACGTGCTGCTT862TTCATTGACAACATTTTCCGATTCACTCAGGCCGGTTCCGAGGTG
PREDICTED: Oryzias latipes suppressor of variegation 3-9 homolog 1 (suv39h1), transcript variant X1, mRNA
XM_004086352.4:1089-1103
TGTAACCCTAACCTGCAGGTCTTCAATGTG1089TTCATTGACAACATTGATGAGAGGCTCCCCAGAATCGCTCTGTTC
PREDICTED: Oryzias latipes suppressor of variegation 3-9 homolog 1 (suv39h1), transcript variant X2, mRNA
XM_011472995.3:1045-1059
TGTAACCCTAACCTGCAGGTCTTCAATGTG1045TTCATTGACAACATTGATGAGAGGCTCCCCAGAATCGCTCTGTTC
PREDICTED: Lingula anatina P protein-like (LOC106158622), transcript variant X1, mRNA
XM_013534685.1:2085-2099
ATCTTGTGGGTCTCAGCTATAACGTCCAGC2085TTCATTGACAACATTCCCTTTACAACTGCTATGATTCCTGTTGTG
PREDICTED: Lingula anatina P protein-like (LOC106158622), transcript variant X2, mRNA
XM_013534686.1:2106-2120
ATCTTGTGGGTCTCAGCTATAACGTCCAGC2106TTCATTGACAACATTCCCTTTACAACTGCTATGATTCCTGTTGTG
PREDICTED: Lingula anatina P protein (LOC106155264), mRNA
XM_013530006.1:2089-2103
ATCTTGTGGGTCTCGGCTATAACTTCCAGC2089TTCATTGACAACATTCCCTTTACAACTGCTATGATTCCTGTTGTG
PREDICTED: Cimex lectularius ATP synthase subunit beta, mitochondrial (LOC106660842), mRNA
XM_014383819.1:1118-1132
AGAGATCAAGAAGGGCAGGATGTACTACTT1118TTCATTGACAACATTTTCAGGTTCACCCAGGCCGGTTCTGAGGTG
Echinococcus granulosus hypothetical protein (EGR_01814), partial mRNA
XM_024491063.1:252-266
ACCATTATCTAGTGCTTCTGTGGAACACTA252TTCATTGACAACATTCTTATTTTCAATTATATATAGGACAGTTCG
Cryptococcus neoformans var. grubii H99 ATP synthase subunit beta, mitochondrial (CNAG_05918), mRNA
XM_012195239.1:1047-1061
CGTGACGAGGAAGGCCAGGATGTGTTGCTT1047TTCATTGACAACATTTTCCGATTCACCCAGGCCGGTTCCGAGGTG
Strongyloides ratti ATP synthase subunit beta (SRAE_2000256800), partial mRNA
XM_024653652.1:925-939
CGTGATCAAGAAGGACAAGATGTACTTCTT925TTCATTGACAACATTTTCCGTTTCACTCAAGCTGGTTCTGAAGTA
Podospora anserina S mat+ uncharacterized protein (PODANS_6_5610), partial mRNA
XM_001910022.1:1012-1026
CGTGACGAGGAGGGTCAGGATGTGTTGCTC1012TTCATTGACAACATTTTCCGCTTCACCCAGGCCGGTTCCGAGGTG
Cryptococcus neoformans var. neoformans JEC21 conserved hypothetical protein (CNF00570), mRNA
XM_571472.1:1046-1060
CGTGACGAGGAAGGCCAGGATGTGTTGCTT1046TTCATTGACAACATTTTCCGATTCACCCAGGCCGGTTCCGAGGTG
Candida tropicalis MYA-3404 ATP synthase beta chain, mitochondrial precursor (CTRG_00125), partial mRNA
XM_002545298.1:571-585
AGAGATGAAGAAGGTCAAGATGTCTTGTTG571TTCATTGACAACATTTTCAGATTCACCCAAGCTGGTTCCGAAGTG
PREDICTED: Cariama cristata ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide (ATP5B), partial mRNA
XM_009697087.1:619-633
AGGGACCAGGAGGGTCAGGACGTGCTGCTC619TTCATTGACAACATTTTCCGCTTCACCCAGGCTGGCTCAGAGGTG
Amorphotheca resinae ATCC 22711 hypothetical protein (M430DRAFT_253167), mRNA
XM_024865220.1:920-934
AGAGATGAAGAGGGTCAAGATGTGTTGCTC920TTCATTGACAACATTTTCCGATTCACCCAGGCCGGTTCCGAAGTG
Amorphotheca resinae ATCC 22711 hypothetical protein (M430DRAFT_146132), mRNA
XM_024862991.1:1541-1555
CCTGTTCAGAGACTACCTCGGTACAGTCTT1541TTCATTGACAACATTGTCAACTGCCTCCCCGTTACTCACCCGGCT
PREDICTED: Temnothorax curvispinosus ATP synthase subunit beta, mitochondrial (LOC112461397), partial mRNA
XM_025026627.1:793-807
CGTGATCAGGAAGGTCAGGATGTGCTGTTA793TTCATTGACAACATTTTCAGATTCACTCAGGCTGGTTCCGAGGTG
Theileria equi strain WA proteasome subunit alpha type, putative (BEWA_051850), partial mRNA
XM_004832526.1:27-41
ATGGCTGACGAGGGAGAGTATAGCTT27TTCATTGACAACATTTAGTCCTTCTGGAAAGTTGGTCCAGATTGA
PREDICTED: Pomacea canaliculata mitochondrial glutamate carrier 1-like (LOC112565734), transcript variant X1, mRNA
XM_025241410.1:6258-6272
CACTACAATTGAAAAAACACACCTACAGCT6258TTCATTGACAACATTTTAAATGCTATGCAACAGTCTTGCTTTAAA
PREDICTED: Pomacea canaliculata mitochondrial glutamate carrier 1-like (LOC112565734), transcript variant X2, mRNA
XM_025241411.1:5626-5640
CACTACAATTGAAAAAACACACCTACAGCT5626TTCATTGACAACATTTTAAATGCTATGCAACAGTCTTGCTTTAAA
PREDICTED: Pomacea canaliculata mitochondrial glutamate carrier 1-like (LOC112565734), transcript variant X3, mRNA
XM_025241412.1:6318-6332
CACTACAATTGAAAAAACACACCTACAGCT6318TTCATTGACAACATTTTAAATGCTATGCAACAGTCTTGCTTTAAA
PREDICTED: Pomacea canaliculata uncharacterized LOC112573578 (LOC112573578), transcript variant X3, ncRNA
XR_003101258.1:1072-1086
GACATGTCAATACTGAGTAAACAGGATACA1072TTCATTGACAACATTATATACACACTTTTTATGAATAGCAGTTGT
PREDICTED: Pomacea canaliculata dynein heavy chain 5, axonemal-like (LOC112576959), transcript variant X1, mRNA
XM_025259851.1:6568-6582
ATCATACGAGTCAAGCTGGCTTCTGTAGGT6568TTCATTGACAACATTATCCTCGCACGCAAGTTCTTCACTTTATAC
PREDICTED: Pomacea canaliculata dynein heavy chain 5, axonemal-like (LOC112576959), transcript variant X2, mRNA
XM_025259852.1:6292-6306
ATCATACGAGTCAAGCTGGCTTCTGTAGGT6292TTCATTGACAACATTATCCTCGCACGCAAGTTCTTCACTTTATAC
PREDICTED: Pomacea canaliculata dynein heavy chain 5, axonemal-like (LOC112576959), transcript variant X3, mRNA
XM_025259853.1:6074-6088
ATCATACGAGTCAAGCTGGCTTCTGTAGGT6074TTCATTGACAACATTATCCTCGCACGCAAGTTCTTCACTTTATAC
PREDICTED: Pomacea canaliculata dynein heavy chain 5, axonemal-like (LOC112576959), transcript variant X4, mRNA
XM_025259855.1:6456-6470
ATCATACGAGTCAAGCTGGCTTCTGTAGGT6456TTCATTGACAACATTATCCTCGCACGCAAGTTCTTCACTTTATAC
PREDICTED: Melanaphis sacchari ATP synthase subunit beta, mitochondrial (LOC112601997), mRNA
XM_025349908.1:1009-1023
AGAGATCAAGAAGGACAAGATGTATTGCTT1009TTCATTGACAACATTTTCCGTTTCACTCAAGCCGGTTCTGAAGTA
PREDICTED: Sipha flava ATP synthase subunit beta, mitochondrial (LOC112692536), mRNA
XM_025567232.1:1015-1029
AGAGATCAAGAAGGACAGGATGTATTGCTT1015TTCATTGACAACATTTTCCGTTTCACACAAGCTGGTTCTGAAGTA
PREDICTED: Agrilus planipennis ATP synthase subunit beta, mitochondrial (LOC108738952), mRNA
XM_018472583.1:903-917
CGTGATCAAGAAGGACAAGATGTGCTACTC903TTCATTGACAACATTTTCAGATTCACACAAGCCGGTTCAGAGGTA
PREDICTED: Apteryx rowi tyrosyl-tRNA synthetase 2 (YARS2), mRNA
XM_026084486.1:1896-1910
ATTATTTTAACAGTGGGGCTTTTTTTTTTT1896TTCATTGACAACATTTAAAGTTAATCCAGTGGCTATGAATGTCAG
PREDICTED: Hyposmocoma kahamanoa ATP synthase subunit beta, mitochondrial-like (LOC113226079), mRNA
XM_026458597.1:1207-1221
AGAGACAAAGAGGGACAGGACGTGTTGCTG1207TTCATTGACAACATTTTCCGGTTCACTCAGGCTGGTTCTGAGGTC
PREDICTED: Hyposmocoma kahamanoa FK506-binding protein 3 (LOC113228557), mRNA
XM_026461905.1:942-956
CCAGCGGTGTACATAGTCAAATACAATCGA942TTCATTGACAACATTCTCGAGAAGATGAACGATGTCTTGCGCCGT
PREDICTED: Ctenocephalides felis ATP synthase subunit beta, mitochondrial (LOC113365770), mRNA
XM_026607313.1:1027-1041
CGTGACCAGGAAGGACAAGACGTACTTCTT1027TTCATTGACAACATTTTCCGTTTCACTCAAGCCGGTTCTGAAGTA
PREDICTED: Ctenocephalides felis CD9 antigen-like (LOC113387681), mRNA
XM_026625041.1:181-195
TGTTCTTTAATTATAACTGTCATTAAAATA181TTCATTGACAACATTTTTCCCGCGACTCCACCCACTCGACGCTAC
PREDICTED: Diaphorina citri ATP synthase subunit beta, mitochondrial-like (LOC103512041), partial mRNA
XM_026825632.1:217-231
CGTGATCAAGAAGGACAAGATGTGCTGCTC217TTCATTGACAACATTTTCCGATTCACCCAGGCCGGTTCTGAAGTA
PREDICTED: Diaphorina citri nicotinamidase-like (LOC103505402), mRNA
XM_026820734.1:406-420
CTGGATTGGCATCCTAGTAATCATGTCTCC406TTCATTGACAACATTAAACTCCGGAAAATCCACCACACGAGTACG
PREDICTED: Trichoplusia ni ATP synthase subunit beta, mitochondrial (LOC113506412), mRNA
XM_026889263.1:951-965
CGTGACCAGGAAGGACAAGACGTACTACTG951TTCATTGACAACATTTTCCGTTTCACTCAAGCTGGTTCTGAGGTA
PREDICTED: Trichoplusia ni ATP synthase subunit beta, mitochondrial-like (LOC113500738), mRNA
XM_026881620.1:982-996
CGTGACCAGGAAGGACAAGACGTACTGCTG982TTCATTGACAACATTTTCCGTTTCACTCAAGCTGGTTCTGAGGTA
PREDICTED: Drosophila erecta ATP synthase subunit beta, mitochondrial (LOC6544863), mRNA
XM_001973139.3:1113-1127
CGTGACGTAGACGGGCAGGATGTGTTGCTC1113TTCATTGACAACATTTTCCGTTTCACCCAGGCGGGATCCGAGGTG
PREDICTED: Neopelma chrysocephalum S-antigen visual arrestin (SAG), transcript variant X1, mRNA
XM_027703688.1:322-336
GCTCTGACAATCTACCTGGGAAAGCGGGAC322TTCATTGACAACATTGGGAACGTGGAACCTGTGGATGGTGTTGTA
PREDICTED: Neopelma chrysocephalum S-antigen visual arrestin (SAG), transcript variant X2, mRNA
XM_027703689.1:322-336
GCTCTGACAATCTACCTGGGAAAGCGGGAC322TTCATTGACAACATTGGGAACGTGGAACCTGTGGATGGTGTTGTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/refseq233/TTCATTGACAACATT
lang : en | db : refseq233 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.143 | 0.133 | search_plus_done; http://172.18.8.137:27493/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.463 | 0.320 | search_minus_done; http://172.18.8.137:27493/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=0
0.463 | 0.000 | cgi_end;

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