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2025-04-07 15:20:06, GGGenome : RefSeq complete RNA release 80 (Jan, 2017)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Populus trichocarpa hypothetical protein (POPTR_0002s00850g) mRNA, complete cds
XM_002300597.2:1354-1368

AAATGGGATGAAAAGATGGAAGAAGCTGCA1354TTCATTGACAACATTGGCTGCTACAGGCGTTATACGTTTGATAGT

Populus trichocarpa hypothetical protein (POPTR_0008s05260g) mRNA, complete cds
XM_002312041.2:3247-3261

CTCCCAGTTTGCGAACCATTATCTAGACGA3247TTCATTGACAACATTGAGAAGCCAAAAGTTCAGCAGCTAATCAGT

Populus trichocarpa H+-transporting two-sector ATPase family protein (POPTR_0008s12550g) mRNA, complete cds
XM_002311447.2:1108-1122

CGTGATGCTGAAGGGCAAGATGTGCTTCTC1108TTCATTGACAACATTTTCCGCTTTACCCAGGCTAACTCAGAGGTG

Populus trichocarpa H+-transporting two-sector ATPase family protein (POPTR_0010s12680g) mRNA, complete cds
XM_002315866.2:1104-1118

CGTGATGCTGAAGGGCAAGATGTGCTTCTA1104TTCATTGACAACATTTTCCGCTTTACCCAGGCTAACTCAGAGGTG

Agaricus bisporus var. bisporus H97 ATP2 beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase (AGABI2DRAFT_190409), mRNA
XM_006457965.1:1000-1014

CGTGATGAAGAAGGTCAGGATGTGTTGCTC1000TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG

Cordyceps militaris CM01 ATP synthase beta chain (CCM_07426), partial mRNA
XM_006672567.1:871-885

CGTGATGAGGAAGGTCAGGACGTGCTGCTC871TTCATTGACAACATTTTCCGTTTCACTCAGGCTGGTTCTGAGGTG

Batrachochytrium dendrobatidis JAM81 hypothetical protein (BATDEDRAFT_20257), mRNA
XM_006680239.1:854-868

CGTGATCAAGAAGGCCAGGATGTGTTGCTT854TTCATTGACAACATTTTCCGTTTCACTCAGGCCGGTTCTGAGGTG

PREDICTED: Neolamprologus brichardi homeobox protein engrailed-1-like (LOC102789766), mRNA
XM_006806441.1:359-373

GCCCAACAGGCCCACAGAACCACCAACTTT359TTCATTGACAACATTTTGAGACCGGACTTTGGCTGCAAGAAGGAG

PREDICTED: Neolamprologus brichardi histone-lysine N-methyltransferase SUV39H1-like (LOC102791492), mRNA
XM_006807165.1:1030-1044

TGTAACCCTAACCTGCAGGTATACAACGTG1030TTCATTGACAACATTGACGAAAGGCTTCCGAGAATTGCGTTATTT

PREDICTED: Chrysochloris asiatica coronin, actin binding protein, 2B (CORO2B), mRNA
XM_006866553.1:277-291

GGCAACGTGCTGGACATCAAGTGGAACCCC277TTCATTGACAACATTATCGCCTCATGTTCAGAGGACACCTCCGTG

Wallemia sebi CBS 633.66 beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase (WALSEDRAFT_32961), mRNA
XM_006958912.1:1477-1491

CGTGATGACGAAGGTCAAGATGTCTTGCTC1477TTCATTGACAACATTTTCCGTTTCACTCAAGCAGGTTCTGAGGTC

Tremella mesenterica DSM 1558 hypothetical protein (TREMEDRAFT_41300), mRNA
XM_007008209.1:1032-1046

CGTGACGAAGAGGGTCAGGATGTGTTGCTC1032TTCATTGACAACATTTTCCGATTCACCCAGGCCGGTTCCGAGGTG

PREDICTED: Physeter catodon dynein, axonemal, heavy chain 5 (DNAH5), mRNA
XM_007127169.1:6420-6434

ATCATCAGGGTGAAGTTGGCTAGTTGCGGC6420TTCATTGACAACATTGTTTTGGCCAGGAAGTTTTTCACGCTCTAC

PREDICTED: Balaenoptera acutorostrata scammoni dynein, axonemal, heavy chain 5 (DNAH5), mRNA
XM_007188253.1:6387-6401

ATCATCAGGGTGAAGTTGGCTAGTTGCGGC6387TTCATTGACAACATTGTTTTGGCCAGGAAGTTTTTCACGCTCTAC

Colletotrichum gloeosporioides Nara gc5 ATP synthase beta (CGGC5_13870), partial mRNA
XM_007286033.1:871-885

CGTGACGAGGAGGGACAGGATGTGTTGCTT871TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCTGAGGTG

Agaricus bisporus var. burnettii JB137-S8 ATP2 beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase (AGABI1DRAFT_111188), mRNA
XM_007326499.1:1000-1014

CGTGATGAAGAAGGTCAGGATGTGTTGCTC1000TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG

Melampsora larici-populina 98AG31 hypothetical protein (MELLADRAFT_45062), mRNA
XM_007415010.1:1070-1084

CGTGACGAAGAGGGACAAGATGTGCTTTTG1070TTCATTGACAACATTTTCCGATTCACCCAAGCTGGTTCCGAGGTA

Neofusicoccum parvum UCRNP2 putative -alpha-glucan-branching enzyme protein mRNA
XM_007581450.1:2986-3000

CGTGATGAGGAGGGCCAGGATGTGCTTCTC2986TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG

Coniophora puteana RWD-64-598 SS2 ATP synthase F1 beta subunit mRNA
XM_007766058.1:968-982

CGTGACGAGGAGGGCCAGGACGTGCTTCTG968TTCATTGACAACATTTTCCGCTTCACGCAAGCCGGTTCCGAGGTA

Coniophora puteana RWD-64-598 SS2 hypothetical protein partial mRNA
XM_007775178.1:2305-2319

ATGAACGAAGTCAAAGAGTCGGCTCAAAGC2305TTCATTGACAACATTCAGAGGAGAACGGTCTTTGTTTCCCAAAAC

Endocarpon pusillum Z07020 ATP synthase subunit beta mRNA
XM_007802133.1:979-993

CGTGACGAGGAAGGACAGGACGTGCTGCTC979TTCATTGACAACATTTTCCGATTCACCCAGGCTGGTTCTGAGGTG

Eutypa lata UCREL1 putative atp synthase beta mitochondrial precursor protein mRNA
XM_007795522.1:856-870

CGTGACGAGGAAGGCCAGGATGTGCTTCTC856TTCATTGACAACATTTTCCGTTTCACTCAAGCCGGTTCTGAGGTG

Metarhizium acridum CQMa 102 ATP synthase beta chain precursor partial mRNA
XM_007816203.1:1081-1095

CGTGACCAGGAAGGCCAGGATGTGCTGCTC1081TTCATTGACAACATTTTCCGATTCACTCAGGCCGGCTCTGAGGTG

Pestalotiopsis fici W106-1 ATP synthase subunit beta mRNA
XM_007837839.1:871-885

CGTGACGCCGAGGGACAGGATGTGCTGCTC871TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG

PREDICTED: Eptesicus fuscus dynein, axonemal, heavy chain 5 (DNAH5), mRNA
XM_008151678.1:6367-6381

ATCATAAGAGTGAAGCTGGCTAGCTGTGGC6367TTCATTGACAACATTGTGTTGGCCAGGAAGTTTTTCACGCTCTAC

PREDICTED: Stegastes partitus homeobox protein engrailed-1-like (LOC103355596), transcript variant X1, mRNA
XM_008279450.1:396-410

GCTCAGCAGGCCCACAGAACCACCAACTTT396TTCATTGACAACATTTTGCGACCGGACTTCGGCTGTAAAAAGGAG

PREDICTED: Stegastes partitus homeobox protein engrailed-1-like (LOC103355596), transcript variant X2, mRNA
XM_008279451.1:396-410

GCTCAGCAGGCCCACAGAACCACCAACTTT396TTCATTGACAACATTTTGCGACCGGACTTCGGCTGTAAAAAGGAG

PREDICTED: Equus przewalskii activating signal cointegrator 1 complex subunit 1 (ASCC1), transcript variant X1, mRNA
XM_008539341.1:744-758

TGTGAGATGCTACAGCAGTGTAAAGAGGAA744TTCATTGACAACATTTGTGGGGGCAAACCCCTGGAAGTAGAGATG

PREDICTED: Equus przewalskii activating signal cointegrator 1 complex subunit 1 (ASCC1), transcript variant X2, mRNA
XM_008539342.1:742-756

TGTGAGATGCTACAGCAGTGTAAAGAGGAA742TTCATTGACAACATTTGTGGGGGCAAACCCCTGGAAGTAGAGATG

PREDICTED: Ursus maritimus dynein, axonemal, heavy chain 5 (DNAH5), transcript variant X1, mRNA
XM_008689897.1:6457-6471

ATCATAAGGGTGAAGCTGGCTAGTTGTGGC6457TTCATTGACAACATTGTGTTGGCCAGGAAGTTTTTCACACTCTAC

PREDICTED: Ursus maritimus dynein, axonemal, heavy chain 5 (DNAH5), transcript variant X2, mRNA
XM_008689898.1:6451-6465

ATCATAAGGGTGAAGCTGGCTAGTTGTGGC6451TTCATTGACAACATTGTGTTGGCCAGGAAGTTTTTCACACTCTAC

Cyphellophora europaea CBS 101466 ATP synthase subunit beta, mitochondrial partial mRNA
XM_008715668.1:1486-1500

AGAGACGAAGAAGGTCAAGATGTGTTGCTC1486TTCATTGACAACATTTTCCGCTTCACTCAGGCCGGTTCTGAAGTG

Capsella rubella hypothetical protein (CARUB_v10007625mg) mRNA, complete cds
XM_006282891.1:997-1011

CGTGATGCTGAAGGCCAAGATGTCTTGCTT997TTCATTGACAACATTTTCCGTTTCACTCAGGCCAACTCTGAAGTG

Capsella rubella hypothetical protein (CARUB_v10000603mg) mRNA, complete cds
XM_006287335.1:1122-1136

CGTGATGCCGAAGGCCAAGATGTCTTGCTT1122TTCATTGACAACATTTTCCGTTTCACTCAGGCTAACTCTGAAGTG

Capsella rubella hypothetical protein (CARUB_v10000474mg) mRNA, complete cds
XM_006287217.1:1186-1200

CGTGATGCGGAAGGCCAAGATGTCTTGCTT1186TTCATTGACAACATTTTCCGATTTACTCAGGCCAACTCTGAAGTG

Wallemia ichthyophaga EXF-994 hypothetical protein partial mRNA
XM_009268544.1:907-921

CGTGACGATGAAGGTCAAGATGTCTTGCTC907TTCATTGACAACATTTTCCGTTTCACTCAAGCTGGTTCTGAAGTT

Heterobasidion irregulare TC 32-1 beta subunit of putative F0F1-type ATP synthase mRNA
XM_009544597.1:984-998

CGTGATGAGGAAGGTCAGGATGTGTTGCTC984TTCATTGACAACATTTTCCGCTTCACTCAGGCCGGTTCCGAGGTG

PREDICTED: Cariama cristata ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide (ATP5B), partial mRNA
XM_009697087.1:619-633

AGGGACCAGGAGGGTCAGGACGTGCTGCTC619TTCATTGACAACATTTTCCGCTTCACCCAGGCTGGCTCAGAGGTG

Neurospora tetrasperma FGSC 2508 H+-transporting ATP synthase beta chain mRNA
XM_009854061.1:982-996

CGTGATGAGGAGGGTCAGGATGTGTTGCTC982TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCTGAGGTG

Nicotiana sylvestris ATP synthase subunit beta, mitochondrial-like (LOC104229400), mRNA
NM_001302565.1:993-1007

AGAGATGCTGAGGGGCAGGATGTGCTTCTC993TTCATTGACAACATTTTCAGATTTACCCAGGCTAACTCAGAGGTG

Colletotrichum fioriniae PJ7 ATP synthase F1 mRNA
XM_007596617.1:868-882

CGTGACGAGGAGGGACAGGATGTGTTGCTC868TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG

Moniliophthora roreri MCA 2997 atp synthase subunit beta partial mRNA
XM_007857359.1:943-957

CGTGATGAGGAGGGTCAGGATGTGTTGCTC943TTCATTGACAACATTTTCCGATTCACCCAAGCCGGCTCCGAAGTG

PREDICTED: Elaeis guineensis ATP synthase subunit beta, mitochondrial-like (LOC105041149), mRNA
XM_010917990.1:1137-1151

CGAGATGCTGAAGGGCAAGATGTGCTTCTT1137TTCATTGACAACATTTTCCGTTTCACCCAAGCAAATTCTGAAGTG

PREDICTED: Populus euphratica ATP synthase subunit beta, mitochondrial-like (LOC105124531), mRNA
XM_011024585.1:1120-1134

CGTGATGCTGAAGGGCAAGATGTGCTTCTC1120TTCATTGACAACATTTTCCGCTTTACCCAGGCTAACTCAGAGGTG

PREDICTED: Populus euphratica uncharacterized LOC105127860 (LOC105127860), mRNA
XM_011029320.1:5024-5038

CTCCCAGTTTGTGAACCATTATCTAGACGA5024TTCATTGACAACATTGAGAAGCCAAAAGTTCAGCAGCTAATCAGT

PREDICTED: Populus euphratica ATP synthase subunit beta, mitochondrial (LOC105135509), mRNA
XM_011040401.1:1087-1101

CGTGATGCTGAAGGGCAAGATGTGCTTCTA1087TTCATTGACAACATTTTCCGCTTTACCCAGGCTAACTCAGAGGTG

PREDICTED: Populus euphratica ATP synthase subunit beta, mitochondrial-like (LOC105119519), mRNA
XM_011017661.1:1124-1138

CGTGATGCTGAAGGGCAAGATGTGCTTCTC1124TTCATTGACAACATTTTCCGCTTTACCCAGGCTAACTCAGAGGTG

PREDICTED: Solenopsis invicta prefoldin subunit 1 (LOC105204559), transcript variant X1, mRNA
XM_011173678.1:229-243

GAAATTCAAGGGTAATTTTTTGTAAGTTTA229TTCATTGACAACATTGTGATAATCAAGGATGTCAAAAGTACTAGA

PREDICTED: Bactrocera cucurbitae ATP synthase subunit beta, mitochondrial (LOC105219929), mRNA
XM_011196280.1:889-903

CGTGATCAGGAGGGACAAGATGTACTGCTT889TTCATTGACAACATTTTCCGCTTCACCCAAGCTGGTTCAGAAGTG

PREDICTED: Bactrocera cucurbitae ATP synthase subunit beta, mitochondrial-like (LOC105220561), partial mRNA
XM_011197006.1:905-919

CGTGATCAGGAGGGACAAGATGTACTGCTT905TTCATTGACAACATTTTCCGCTTCACCCAAGCTGGTTCAGAAGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

Redirect URI : https://gggenome.dbcls.jp/refseq80/TTCATTGACAACATT
lang : en | db : refseq80 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.175 | 0.166 | search_plus_done; http://172.18.8.74:28690/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.219 | 0.043 | search_minus_done; http://172.18.8.74:28690/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=0
0.219 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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