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2025-04-06 03:30:11, GGGenome : Rhesus pre-spliced RNA, RefSeq on Mmul_10/rheMac10, D3G 23.02 (Feb, 2023)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

XM_001084620.3|SYT1;695390|chr11:78464657:79062480:+|prespliced::chr11:78464657-79062480(+)
position: 244673-244687

GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244673AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG

XM_015152349.2|SYT1;695390|chr11:78464662:79062480:+|prespliced::chr11:78464662-79062480(+)
position: 244668-244682

GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244668AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG

XM_015152348.2|SYT1;695390|chr11:78464704:79062480:+|prespliced::chr11:78464704-79062480(+)
position: 244626-244640

GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244626AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG

XM_015152346.2|SYT1;695390|chr11:78464731:79062480:+|prespliced::chr11:78464731-79062480(+)
position: 244599-244613

GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244599AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG

XM_001100761.4|LOC704111;704111|chr19_NW_021160375v1_random:146198:160055:-|prespliced::chr19_NW_021160375v1_random:146198-160055(-)
position: 1565-1579

CATTGCCAGGAGAGCTGTTAACATTATACT1565AATGTTGTCAATGAAAAGCTAAGATAGGCCGGCGTGGTGGCTCAC

XR_001445025.2|LOC106998534;106998534|chr5:146514149:146527572:-|prespliced::chr5:146514149-146527572(-)
position: 218-232

TTAATATTAATATTAAATGGATGCCCACAA218AATGTTGTCAATGAAAATCTGTGTTCAAAGCGATAATATATTCTG

XM_015118624.2|COX10;718301|chr16:13863555:13987221:+|prespliced::chr16:13863555-13987221(+)
position: 27270-27284

GCCTCTGGGCCTATATTAGATGGGCCATGC27270TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA

NM_001194644.1|COX10;718301|chr16:13863558:14003752:+|prespliced::chr16:13863558-14003752(+)
position: 27267-27281

GCCTCTGGGCCTATATTAGATGGGCCATGC27267TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA

XM_001100209.4|HESX1;704551|chr2:113356010:113384258:-|prespliced::chr2:113356010-113384258(-)
position: 25584-25598

ACTATGCTGCACTCCAAATACTATTGTGTT25584TTCATTGACAACATTCCCTATTACATATGCATATGAAAAACAGGC

XM_028848051.1|TENM3;700867|chr5:178767098:180127370:+|prespliced::chr5:178767098-180127370(+)
position: 1911-1925

TTTGGACCCCCAGATCAGTCTTCATATTCT1911TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT

XM_028848053.1|TENM3;700867|chr5:178767098:180127370:+|prespliced::chr5:178767098-180127370(+)
position: 1911-1925

TTTGGACCCCCAGATCAGTCTTCATATTCT1911TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT

XM_028848054.1|TENM3;700867|chr5:178767098:180127370:+|prespliced::chr5:178767098-180127370(+)
position: 1911-1925

TTTGGACCCCCAGATCAGTCTTCATATTCT1911TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT

XM_028848055.1|TENM3;700867|chr5:178767098:180127370:+|prespliced::chr5:178767098-180127370(+)
position: 1911-1925

TTTGGACCCCCAGATCAGTCTTCATATTCT1911TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT

XM_028848056.1|TENM3;700867|chr5:178767098:180127370:+|prespliced::chr5:178767098-180127370(+)
position: 1911-1925

TTTGGACCCCCAGATCAGTCTTCATATTCT1911TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT

XM_028848057.1|TENM3;700867|chr5:178767098:180127370:+|prespliced::chr5:178767098-180127370(+)
position: 1911-1925

TTTGGACCCCCAGATCAGTCTTCATATTCT1911TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT

XM_028848058.1|TENM3;700867|chr5:178767098:180127370:+|prespliced::chr5:178767098-180127370(+)
position: 1911-1925

TTTGGACCCCCAGATCAGTCTTCATATTCT1911TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT

XM_028848059.1|TENM3;700867|chr5:178767098:180127370:+|prespliced::chr5:178767098-180127370(+)
position: 1911-1925

TTTGGACCCCCAGATCAGTCTTCATATTCT1911TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT

XM_015139652.2|F11;702117|chr5:183545316:183572015:+|prespliced::chr5:183545316-183572015(+)
position: 12638-12652

GCCTGAGCCACCATGCCCAGCTTGCTATTC12638TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA

XM_015139653.2|F11;702117|chr5:183545316:183572015:+|prespliced::chr5:183545316-183572015(+)
position: 12638-12652

GCCTGAGCCACCATGCCCAGCTTGCTATTC12638TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

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Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/rheMac10_RefSeq_prespliced_d3g2302/AATGTTGTCAATGAA
lang : ja | db : rheMac10_RefSeq_prespliced_d3g2302 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.080 | 0.071 | search_plus_done; http://172.18.8.78:28951/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.089 | 0.009 | search_minus_done; http://172.18.8.78:28951/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=44
0.099 | 0.009 | cgi_end;

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