GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-20 23:21:25, GGGenome : Rhesus genome, BGI CR_1.0/rheMac3 (Oct, 2010)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr2:80425458-80425472
ACTATGCTGCACTCCAAATACTATTGTGTT80425458TTCATTGACAACATTCCCTATTACATATGCATATGAAAAACAGGC
chr5:142597777-142597791
CAGAATATATTATCGCTTTGAACACAGATT142597777TTCATTGACAACATTTTGTGGGCATCCATTTAATATTAATATTAA
chr5:159514645-159514659
TAAAACCTCTGATTTTGTGTAACACTCCTT159514645TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGACTACAT
chr5:175559001-175559015
TTTGGACCCCCAGATCAGTCTTCATATTCT175559001TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
chr5:180375606-180375620
GCCTGAGCCACCATGCCCAGCTTGCTATTC180375606TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA
chr16:14512275-14512289
GCCTCTGGGCCTATATTAGATGGGCCATGC14512275TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
chr17:47830159-47830173
TGTTCAAAGTTTTCCCCTCCAATGTATCTT47830159TTCATTGACAACATTCGGATTTATCACATCAATCAGTCAATAAAT
chr17:64726053-64726067
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA64726053TTCATTGACAACATTGCCTGAGGTAACTCACACTGAGGTGACAAC
chr19:47568572-47568586
GTGAGCCACCACACCGGCCTATCTTAGCTT47568572TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAG
chrUn_JH297300:47-61
TGAGCCACCACCCCTGGCCTGTCTTAGCTT47TTCATTGACAACATTAGTATAATGTTACAGCTCTCCTAAGGGAGT
chr7:100511054-100511068
TTAATATTAATATTAAATGGATGCCCACAA100511054AATGTTGTCAATGAAAATCTGTGTTCAAAGCGATAATATATTCTG
chr11:76588551-76588565
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA76588551AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
chr14:47628077-47628091
GTTTGCTCTATTCACTGTCCTCAACGCTAG47628077AATGTTGTCAATGAACAAGACATATCTATGTTCCTGGAAACTCAA
chr19:47410150-47410164
CTCCCTTAGGAGAGCCGTTAACATTATACT47410150AATGTTGTCAATGAAAAAGCTAAGATAGGCAGGGCGTGGTGGCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/rheMac3/TTCATTGACAACATT
lang : en | db : rheMac3 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.082 | 0.074 | search_plus_done; http://172.18.8.77:28056/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.006 | search_minus_done; http://172.18.8.77:28056/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=40
0.089 | 0.001 | cgi_end;

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