GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-21 21:30:42, GGGenome : Rat pre-spliced RNA, RefSeq curated protein coding on mRatBN7.2/rn7, D3G 22.02 (Feb, 2022)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

NM_053952.1|Nup155;117021|chr2:57201309:57252918:+|prespliced::chr2:57201309-57252918(+)
position: 27620-27634
CCTCTCCCATTTACATTTAGTTTTAAGTAA27620TTCATTGACAACATTTTTTGCATTGTTCAGCCCTTTACCTGTATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/rn7_RefSeqCuratedProtCoding_prespliced_d3g2202/TTCATTGACAACATT
lang : en | db : rn7_RefSeqCuratedProtCoding_prespliced_d3g2202 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.078 | 0.070 | search_plus_done; http://172.18.8.78:28919/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.082 | 0.004 | search_minus_done; http://172.18.8.78:28919/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=49
0.082 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).