GGGenome | Results

2025-04-07 14:49:32, GGGenome : Rat pre-spliced RNA, RefSeq curated on mRatBN7.2/rn7, D3G 24.03 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

NM_053952.1|Nup155;117021|chr2:57201309:57252918:+|prespliced::chr2:57201309-57252918(+)
position: 27620-27634

CCTCTCCCATTTACATTTAGTTTTAAGTAA27620TTCATTGACAACATTTTTTGCATTGTTCAGCCCTTTACCTGTATT

Data Export:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.078 | 0.069 | search_plus_done; http://172.18.8.77:28983/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.082 | 0.004 | search_minus_done; http://172.18.8.77:28983/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.083 | 0.001 | cgi_end;