GGGenome | Results

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2025-04-03 03:50:08, GGGenome : Rat genome, mRatBN7.2/rn7, D3G 23.02 (Feb, 2023)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

chr2
position: 41984772-41984786

TTTTCAAAATCTTTTGCCTGTATAGACTTT41984772TTCATTGACAACATTAAACTGTATGACATGCAAAAAATAACAGGT

chr2
position: 57228929-57228943

CCTCTCCCATTTACATTTAGTTTTAAGTAA57228929TTCATTGACAACATTTTTTGCATTGTTCAGCCCTTTACCTGTATT

chr2
position: 59328893-59328907

CTGAACTTTCACCATAACAACCCATTAGGT59328893TTCATTGACAACATTCTATGGCAGCTATAGACCCCAACTCCAAAT

chr4
position: 160381290-160381304

AAACTGCGCTAAGCAAGACGGTATGGTATT160381290TTCATTGACAACATTAAAGAAAATAGAGAGATAGACACTCGTGTG

chr14
position: 30092986-30093000

GAAGCTAATAGTGCAATCGCCATGGTCTCC30092986TTCATTGACAACATTAACAGCTGTAATAAAATCAAGATATTGGCA

chr18
position: 23542900-23542914

ACATTCCTTACTCCTCTGACAGCAGTTTCT23542900TTCATTGACAACATTCAGGCTATCAGGCCTGATGTTGAGGTCCTT

chr2
position: 4519536-4519550

AGGATAAGATTTAAGATTCAGTAAATATTT4519536AATGTTGTCAATGAAATCACACCTTGAACTCTGACCTTTCATTCA

chr2
position: 222985943-222985957

ATACCAAGTAAAAAAACAAAAAAACAAAAA222985943AATGTTGTCAATGAAGGTGTGGAAGAAAATTTTCCAAACCTAGTG

chr3
position: 31606500-31606514

CTACTTATTCATTCATGTATGTGGGTTTCA31606500AATGTTGTCAATGAACACTGCTGCTTCATCGAACACATGAAAAAT

chr5
position: 94935913-94935927

CATTGTCAACAGTTATACATTTGAAACTTT94935913AATGTTGTCAATGAAATAGATCTGTTCATCAAATAATCTGAAAAA

chr6
position: 65952859-65952873

CCATAGATTAGTCATAGATAGCAGCTACTA65952859AATGTTGTCAATGAAGTTTCTACACAAATGGTAATTAGGCAATTT

chr7
position: 103337592-103337606

TCTCTTATGTATCCATTGTCCAATTTCTAG103337592AATGTTGTCAATGAACTGTGTCTTTGAGGCAGTTTCTTTTTGAGC

chr11
position: 77453753-77453767

TTATTCTCTTTAAAATTACACCAAAAGGAA77453753AATGTTGTCAATGAAAATTTAACAATAAGAAAAGAAGGTTAAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.78:28950/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.090 | 0.007 | search_minus_done; http://172.18.8.78:28950/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=44
0.095 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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