GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-25 13:29:55, GGGenome : Squirrel monkey genome, Broad/saiBol1 (Oct, 2011)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

JH378105:4936406-4936420
GATAGTAAAAACTATTTGAAAAATGGGAAT4936406TTCATTGACAACATTTTTTGGAAATAGAACCTTCAGTCATTAGAG
JH378105:43893255-43893269
TCTTCAAATATTTTACAGAGTTCAACTCTT43893255TTCATTGACAACATTAAAGTTGTAGAGCCACTATTCTAAGCATTC
JH378106:40666215-40666229
TGTACATATGCTATAGTTATATTAGAATTG40666215TTCATTGACAACATTAAAAAGGCCTTTTTGCAAAATATGATAAAT
JH378121:8343911-8343925
GTTTAATGGCAAAATGTTATAATTAATTCA8343911TTCATTGACAACATTGATATATCTCTACTTAACCACCTCTCTACC
JH378154:374307-374321
TAGCTGGCTAGTTGAAAAATGATATAATGT374307TTCATTGACAACATTATATGAGATGCTGTAATTTATTTATAGACT
JH378155:6824991-6825005
CCTAGGTATAATTCACTGACCTGCTGATCT6824991TTCATTGACAACATTGCCATTAACCTTGGGAGCTGGAAAGGCCCT
JH378172:11147989-11148003
GCGATGCCTGGCCCGAGTCAGCACATTAGC11147989TTCATTGACAACATTGGTTCATTCAACAAATAATTGCCTGAGAAG
JH378204:498446-498460
TTTTGAGTTTTGATATGCCATATTATGATT498446TTCATTGACAACATTAATTTTTTTTTTCTTGAGGCCGGGTTTCAC
JH378222:2203166-2203180
ACAGCTGTGGTTTAATATTTTAACTTGCAC2203166TTCATTGACAACATTTAACGAGTGAGACAAATGAGAGTAAATATA
JH378109:25308985-25308999
TCAATGAATAGCAAATTTGCATTATATGCT25308985AATGTTGTCAATGAATAGAATATAAATGTACTGCTTTGCTGCAAT
JH378112:17462182-17462196
TTTAGGTTTTATGTAGTCTTCAGATTGTAT17462182AATGTTGTCAATGAATTCAAGTAAAAACAAACTCATATTGTACAC
JH378113:8351974-8351988
TAATGCCAAGCTTATAGTGGGAACTCAAAA8351974AATGTTGTCAATGAATACGTTACATCATTATACATAGGTTGCCAC
JH378115:12672996-12673010
ATATATTTGATATTTAATAAAGTTCCAGCT12672996AATGTTGTCAATGAAAAAGCAAAAGTAGCATTTCCAAAATAGAAA
JH378121:4259442-4259456
CTTAAATATCACAAAAATAAAGTTGGGCCC4259442AATGTTGTCAATGAAGAGAAATGAAAATGCTATGAAAACTGGCCA
JH378121:25437055-25437069
AAAACTTTCATTGTTAACTTCTGTTTTCAA25437055AATGTTGTCAATGAACTGTCATTGTCCACAGAATAAAGGTCAAGT
JH378131:15035314-15035328
TTAATATTAATATTAAATGGATGCCCACAA15035314AATGTTGTCAATGAAAATCTGTGTTTAAAGCGATAATATATTCTG
JH378138:3054859-3054873
ATATGAAAATTCAATAAAAGTACATTATAA3054859AATGTTGTCAATGAAATTGTAATTATTTTTCAGAGTATGACATTA
JH378142:12721379-12721393
ATTCACGGTTTGTCACCTAGTTTTGTTGGA12721379AATGTTGTCAATGAATTTATTTTTGTATCCAGTTTCTCTGTATGC
JH378165:7549679-7549693
AATTCTATTTAAATTCTGCAGAACTTAATG7549679AATGTTGTCAATGAAAGAATATGAAGACTGATTTTTATATGTTTC
JH378180:9829707-9829721
TGAAAAAAACCCAGAACTTTCAAAATGAAA9829707AATGTTGTCAATGAAACTAAAAACATCTTGGATAAGTTTAACATA
JH378310:592492-592506
TGTAGTCAGCAAGTAGTTAATTGCTGTTTA592492AATGTTGTCAATGAAAAGGAGTATTATACAAAATCCGAGGATTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/saiBol1/TTCATTGACAACATT
lang : en | db : saiBol1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.085 | 0.077 | search_plus_done; http://172.18.8.77:28062/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.092 | 0.006 | search_minus_done; http://172.18.8.77:28062/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=41
0.095 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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