GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-11-27 13:59:32, GGGenome : Tarsier genome, Tarsius_syrichta-2.0.1/tarSyr2 (Sep, 2013)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

KE938866v1:16975-16989
GCAGAAATAATTTGGAGGTCTCAAGTTTCA16975AATGTTGTCAATGAATCAGTTCACAATTGAAGACTGTAAGCCATC
KE939692v1:152373-152387
ACATCACTGTGTATTCCGTGAATAGGCACA152373AATGTTGTCAATGAAGTTTTTATAATTTTAAAAAGTATAAGTACA
KE940006v1:68111-68125
GTACATTTTCTGCTAAAGCCATACCTGGTT68111AATGTTGTCAATGAATATAACCGAAGGTATAGACCAATGTTTGAT
KE941432v1:1146956-1146970
CAAGAGATTCATAGCAGAAACCTTGTGTCA1146956AATGTTGTCAATGAAGGTTTTTTGAAGGGATGGGTTAACACTACA
KE944433v1:53767-53781
ATAGTAGCTGTAACATAACAAGCATTGGGT53767AATGTTGTCAATGAATAAATAGATGAATAATGTATCTTCCTGTTA
KE948815v1:493612-493626
ATGCAAGATGGCTTGAATGAATTTGTATCC493612AATGTTGTCAATGAAAGGAAGGTGAGGAGGGAAGGAGAACCCTCT
KE948841v1:529362-529376
CCCATAATCAAACACATAATCAAACACATT529362AATGTTGTCAATGAAACTTATGAATATTCACACTAATTAAGATAA
KE950583v1:865893-865907
TTGTCACCTTCAGCGTGAGTTACCTCAGGC865893AATGTTGTCAATGAATACAGCCTCCAGGGAGAACCTCTAGTCACA
KE938214v1:331272-331286
AAGATTTCCTTCATTGTAAAAAGTACACAT331272TTCATTGACAACATTTTAAAACATGTGTTACCCAGTGTTTACCAA
KE938434v1:179965-179979
CTCCCTATCTTTTATTCCCTAGTCCATTGT179965TTCATTGACAACATTCTTGACTGTCTCCCTCCTTTGTCTATCGTA
KE941073v1:830781-830795
ATGACATAAGCATTGTTGGATTTGTTTAAG830781TTCATTGACAACATTCCCGTCTTTGCCTTTTAAGTTCTGAACCAA
KE943607v1:190565-190579
CTGGGATTCAGGCTCTATAATGCATATTGT190565TTCATTGACAACATTCAAAACTTCATAGGCAGTGAATTAAAAAAT
KE946568v1:293871-293885
TGTACAAGGGCTTGGATATCACAAGGCACA293871TTCATTGACAACATTAATGTAACAATGCAGCACACTATAAAGTTA
KE949125v1:186577-186591
CCAGTATACTGCACTCCAAATACTATTGTT186577TTCATTGACAACATTCACTATTACATATGCATATGAAAAACAGGC
KE949725v1:9387-9401
TTTGGCCTTTTGACAATTAGTCAATTATTC9387TTCATTGACAACATTTTGACCTCATTACCCAGTAGTTATTAAACT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/tarSyr2/AATGTTGTCAATGAA
lang : ja | db : tarSyr2 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.101 | 0.093 | search_plus_done; http://172.18.8.77:28773/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.117 | 0.016 | search_minus_done; http://172.18.8.77:28773/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=42
0.119 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).